当前解析结果
SmilChr03G003901| 统一新 Gene ID | SmilChr03G003901 |
|---|---|
| 名称 | SmilChr03G003901 |
| 描述 | phosphoribosylamine--glycine ligase-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 58111893 - 58114524 / - |
| NCBI Gene ID | LOC131014756 |
|---|---|
| GeneID | 131014756 |
| locus_tag | - |
| NCBI Name | LOC131014756 |
| 原始查询 | SmilChr03G003901 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphoribosylamine--glycine ligase-like |
| 产物 | phosphoribosylamine--glycine ligase-like |
| Arabidopsis | AT1G09830 (PUR2)Glycinamide ribonucleotide (GAR) synthetase [Source:NCBI gene (formerly Entrezgene);Acc:837515] identity=70.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os08g0191200 (VAL1)- identity=71.9; qcov=0.992; evalue=0; confidence=high |
| GO | GO:0004637 (phosphoribosylamine-glycine ligase activity); GO:0005524 (ATP binding); GO:0009113 (purine nucleobase biosynthetic process); GO:0046872 (metal ion binding) |
| KEGG | smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01071 (GARS_A); PF02843 (GARS_C); PF02844 (GARS_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014756 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057798826.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057798826.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057798826.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798826.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798826.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:58112053 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C53,C56 |
Chr3:58112193 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B122,D2 |
Chr3:58112243 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,D2 |
Chr3:58112292 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C20 |
Chr3:58112292 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C20 |
Chr3:58112430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,B42,D2 |
Chr3:58112627 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,D2 |
Chr3:58112645 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B107,B54,C63,C79 |
Chr3:58112820 |
GC |
G |
1bp_deletion | frameshift_variant | 6 | B110,B32,B4,B54,C25,C5 |
Chr3:58112847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B107,B54,C63,C79 |
Chr3:58112989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B13,B25,B35,C64,C66 |
Chr3:58113029 |
ATC |
A |
2bp_deletion | frameshift_variant | 2 | B65,C50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798826.1PF02844
GARS_N 81-182 aa
PF01071
GARS_A 183-377 aa
PF02843
GARS_C 412-505 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798826.1 |
Pfam | PF02844 |
GARS_N | Domain | 81 | 182 | 4.1e-33 | 114.8 | Phosphoribosylglycinamide synthetase, N domain |
XP_057798826.1 |
Pfam | PF01071 |
GARS_A | Domain | 183 | 377 | 8.7e-83 | 277.6 | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain |
XP_057798826.1 |
Pfam | PF02843 |
GARS_C | Domain | 412 | 505 | 9e-33 | 113.2 | Phosphoribosylglycinamide synthetase, C domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。