Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003911`

染色体: Chr03 坐标: 58195779-58201465 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003911`
名称	SmilChr03G003911
描述	3-phosphoinositide-dependent protein kinase 2-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	58195779 - 58201465 / `-`

ID 对照

NCBI Gene ID	`LOC131014769`
GeneID	`131014769`
locus_tag	`-`
NCBI Name	`LOC131014769`
原始查询	`SmilChr03G003911`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-phosphoinositide-dependent protein kinase 2-like
产物	3-phosphoinositide-dependent protein kinase 2-like
Arabidopsis	`AT3G10540` (AT3G10540) 3-phosphoinositide-dependent protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:820219] identity=77.9; qcov=0.974; evalue=0; confidence=high
Rice	`Os01g0872800` (PDK1) - identity=67.9; qcov=0.988; evalue=0; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction)
KEGG	smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like); PF14593 (PH_3)
InterPro	-
eggNOG	-
NR	GeneID:131014769

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057798841.1`
2	Cytosol	细胞质基质	0.40000	`XP_057798841.1`
3	Nucleus	细胞核	0.20000	`XP_057798841.1`
4	Chromosome	染色体	0.00000	`XP_057798841.1`
5	Centromere	着丝粒	0.00000	`XP_057798841.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:58196178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B29
`Chr3:58196723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B90,B92,C49,D4
`Chr3:58196725`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B29
`Chr3:58196783`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr3:58197213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:58197481`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:58197510`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr3:58197795`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr3:58197810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B122,B24,C36,C48,D6
`Chr3:58197846`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B39
`Chr3:58197871`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr3:58198281`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,A21,B122,C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798841.1

502 aa

251

502

Pkinase

PK_Tyr_Ser-Thr

Kinase-like

PH_3

PF00069 Pkinase 60-312 aa PF07714 PK_Tyr_Ser-Thr 61-310 aa PF14531 Kinase-like 164-275 aa PF14593 PH_3 399-501 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798841.1`	Pfam	`PF00069`	Pkinase	Domain	60	312	2.1e-66	224.8	Protein kinase domain
`XP_057798841.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	61	310	5.9e-29	101.9	Protein tyrosine and serine/threonine kinase
`XP_057798841.1`	Pfam	`PF14531`	Kinase-like	Family	164	275	2.9e-07	30.7	Kinase-like
`XP_057798841.1`	Pfam	`PF14593`	PH_3	Domain	399	501	4.6e-30	104.4	PH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942858.1
GAAAAAAGCAATGAGATATAGATGGTGGCCATCATTCAATTTCATGTGCTCTTCGATCTCCATACATGCAGAGACACACACACACACACACACACACACTTCCCCTCTCAATCCCACATTCATAGCCTTTTCCTTTTTGGGGCCTTGCAAAAATCATAAAGCTTTCACCTTTTTCAGGGAAGAATACATTCTCACATTTGCATACAAACACAAAACTCAACACCAAAAAGCATTTATAAAAGAAAACCACAATACATTGA...

CDS

1 records

下载 CDS FASTA

LOC131014769
ATGGCATTAATGGAGGAAGAAGGAGGATCAGTTGGCGAAATGGACAAGGAATTTAATTCGAAGCTGAAGATTGAGAGCAACAGTTCCTCTTCTAACAATAGCAGCAGCAATACACCTCAGAGATCTAAGAATTTTGCATTCAGAGCGCCACAGGAGAATTTCAGCATCCAAGATTTTGAACTCGAGAAGATTTATGGTGTTGGTTCTTATTCTAAGGTTGTTAGAGCAAGAAAGAAAGACACGGGAATGGTTTATGCCAT...

Protein

1 records

下载 Protein FASTA

XP_057798841.1
MALMEEEGGSVGEMDKEFNSKLKIESNSSSSNNSSSNTPQRSKNFAFRAPQENFSIQDFELEKIYGVGSYSKVVRARKKDTGMVYAMKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLYFTFQDSCSLYMGLESCDGGELFDQITRKGRLSEDETRFYAAEVVDALEYIHSMGLIHRDIKPENLLLTTDGHIKIADFGSVKPMQGSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTVYQM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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