当前解析结果
SmilChr03G003936| 统一新 Gene ID | SmilChr03G003936 |
|---|---|
| 名称 | SmilChr03G003936 |
| 描述 | cation-dependent phenylpropanoid and flavonoid 8-O-methyltransferase 1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 58422533 - 58423626 / - |
| NCBI Gene ID | LOC131014790 |
|---|---|
| GeneID | 131014790 |
| locus_tag | - |
| NCBI Name | LOC131014790 |
| 原始查询 | SmilChr03G003936 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cation-dependent phenylpropanoid and flavonoid 8-O-methyltransferase 1-like |
| 产物 | cation-dependent phenylpropanoid and flavonoid 8-O-methyltransferase 1-like |
| Arabidopsis | AT4G26220 (AT4G26220)S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828728] identity=66.8; qcov=0.895; evalue=3.48e-91; confidence=high |
| Rice | Os06g0165800 (ROMT-16)- identity=58.6; qcov=0.89; evalue=7.68e-74; confidence=high |
| GO | GO:0008171 (O-methyltransferase activity); GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity) |
| KEGG | smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00941 (Flavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00945 (Stilbenoid, diarylheptanoid and gingerol biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01596 (Methyltransf_3); PF13578 (Methyltransf_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014790 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057798862.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057798862.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.40000 | XP_057798862.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057798862.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057798862.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:58422898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B140,B26,C40,C9 |
Chr3:58423010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr3:58423018 |
CTA |
C |
2bp_deletion | frameshift_variant | 2 | B23,C80 |
Chr3:58423018 |
CTA |
C |
2bp_deletion | CDS_variant | 2 | B23,C80 |
Chr3:58423070 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:58423073 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B70,B71,C62 |
Chr3:58423266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,B90 |
Chr3:58423324 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,B64,C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798862.1PF01596
Methyltransf_3 22-208 aa
PF13578
Methyltransf_24 48-154 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798862.1 |
Pfam | PF01596 |
Methyltransf_3 | Domain | 22 | 208 | 8.2e-72 | 241.5 | O-methyltransferase |
XP_057798862.1 |
Pfam | PF13578 |
Methyltransf_24 | Domain | 48 | 154 | 7e-11 | 43.7 | Methyltransferase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。