Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003944`

染色体: Chr03 坐标: 58507257-58516677 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003944`
名称	SmilChr03G003944
描述	protein RNA-directed DNA methylation 3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	58507257 - 58516677 / `-`

ID 对照

NCBI Gene ID	`LOC131014796`
GeneID	`131014796`
locus_tag	`-`
NCBI Name	`LOC131014796`
原始查询	`SmilChr03G003944`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein RNA-directed DNA methylation 3
产物	protein RNA-directed DNA methylation 3
Arabidopsis	`AT5G04290` (KTF1) kow domain-containing transcription factor 1 [Source:NCBI gene (formerly Entrezgene);Acc:830308] identity=40.5; qcov=0.694; evalue=0; confidence=medium
Rice	`Os02g0772000` - identity=43; qcov=0.146; evalue=1.02e-46; confidence=weak
GO	GO:0003729 (mRNA binding); GO:0003735 (structural constituent of ribosome); GO:0005840 (ribosome); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0006368 (transcription elongation by RNA polymerase II); GO:0006412 (translation); GO:0032044 (DSIF complex); GO:0032784 (regulation of DNA-templated transcription elongation)
KEGG	-
Pfam	PF00467 (KOW); PF03439 (Spt5-NGN); PF23037 (KOWx_SPT5); PF23042 (KOW1_SPT5); PF23290 (KOW5_SPT5); PF23291 (KOW4_SPT5)
InterPro	-
eggNOG	-
NR	GeneID:131014796

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798867.1`
2	Chromosome	染色体	0.00000	`XP_057798867.1`
3	Centromere	着丝粒	0.00000	`XP_057798867.1`
4	Chromatin	染色质	0.00000	`XP_057798867.1`
5	Telomere	端粒	0.00000	`XP_057798867.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:58508138`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,B127,B131,B134,B34
`Chr3:58508145`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,B127,B131,B134,B34
`Chr3:58508170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:58508246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,D5
`Chr3:58508255`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C1,C17
`Chr3:58508409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C1,C17
`Chr3:58508427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A13,A22
`Chr3:58508554`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,D10,D11,D5
`Chr3:58508601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B19,B99
`Chr3:58508607`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,B118,B120,B81,C7
`Chr3:58508658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C1,C17
`Chr3:58508671`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D10,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798867.1

1576 aa

788

1576

Spt5-NGN

KOW1_SPT5

KOW

KOWx_SPT5

KOW4_SPT5

KOW

KOW5_SPT5

PF03439 Spt5-NGN 147-230 aa PF23042 KOW1_SPT5 239-364 aa PF00467 KOW 241-272 aa PF23037 KOWx_SPT5 416-462 aa PF23291 KOW4_SPT5 475-528 aa PF00467 KOW 485-507 aa PF23290 KOW5_SPT5 589-633 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798867.1`	Pfam	`PF03439`	Spt5-NGN	Family	147	230	2.2e-20	73.1	Early transcription elongation factor of RNA pol II, NGN section
`XP_057798867.1`	Pfam	`PF23042`	KOW1_SPT5	Domain	239	364	9.7e-26	91.6	Transcription elongation factor SPT5, KOW1 domain
`XP_057798867.1`	Pfam	`PF00467`	KOW	Family	241	272	2.2e-13	50.1	KOW motif
`XP_057798867.1`	Pfam	`PF23037`	KOWx_SPT5	Domain	416	462	1.1e-13	51.3	Transcription elongation factor SPT5, KOWx domain
`XP_057798867.1`	Pfam	`PF23291`	KOW4_SPT5	Domain	475	528	7.5e-23	80.9	Transcription elongation factor SPT5, fourth KOW domain
`XP_057798867.1`	Pfam	`PF00467`	KOW	Family	485	507	2.2e-13	50.1	KOW motif
`XP_057798867.1`	Pfam	`PF23290`	KOW5_SPT5	Domain	589	633	9.9e-11	41.7	Transcription elongation factor SPT5, fifth KOW domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942884.1
TTTTTTCTTGCGCCAAGTGGAAAGGGTATCGACTATCCTACCAGTTTTTTGTTTTTTGTTTTTTGTTTTTTTACTGAAATTCATCTCAAATATTGTCGACTCTCTCACTCACTCTCAACTCTCTCTCTCTCTAGAAACGCACATGAGAAATTCCCAACAAATTTCTAAATAAATAGCGAAGATTGGGGTGAAATTCTGAAGAAATCGGAATGGTTTCAGCTAAGGGTAAAGAGAAGGTAACTGATGCCGGTGGAAAGGGG...

CDS

1 records

下载 CDS FASTA

LOC131014796
ATGGTTTCAGCTAAGGGTAAAGAGAAGGTAACTGATGCCGGTGGAAAGGGGAAGAGGAAGCGGAACGGCCGCGGAGGAGGCGACGATGACAAGACGGGGCGGAAACGGAAGAGCCCCGGCGCGATTCGGTTTATCGATCATTCGGCGTACGAGGACGACGCCGAAGAGGATTCCAGCGAATATTCCAGCGATGATTCCGGCTACGATAGTGAGTTGTTTGAAGATCATCTTGGCTCTGAGGTGAAAGTGAACAATGATCC...

Protein

1 records

下载 Protein FASTA

XP_057798867.1
MVSAKGKEKVTDAGGKGKRKRNGRGGGDDDKTGRKRKSPGAIRFIDHSAYEDDAEEDSSEYSSDDSGYDSELFEDHLGSEVKVNNDPGKASNLQHVKEEAMSEEEYDRMMEERYKPGSSFVTYAEDGYDQKNSIDSVYVPSAMDPTIWKVKCMVGRERYSALCLMQKYADLAYLQNKLQIISACALDHLKGFIIIEAEKQNDIYEACKGLSTIYLSKVTAVPSNEISRLLSVRSKSSAISEGDWARVKNGRYKGDLAEVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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