Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003947`

染色体: Chr03 坐标: 58521883-58526951 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003947`
名称	SmilChr03G003947
描述	developmentally-regulated G-protein 3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	58521883 - 58526951 / `+`

ID 对照

NCBI Gene ID	`LOC131014803`
GeneID	`131014803`
locus_tag	`-`
NCBI Name	`LOC131014803`
原始查询	`SmilChr03G003947`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	developmentally-regulated G-protein 3
产物	developmentally-regulated G-protein 3
Arabidopsis	`AT4G39520` (AT4G39520) GTP-binding protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830106] identity=90; qcov=1; evalue=0; confidence=high
Rice	`Os07g0627800` (P0506F02.114) - identity=90.2; qcov=1; evalue=0; confidence=high
GO	GO:0002181 (cytoplasmic translation); GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm)
KEGG	-
Pfam	PF01926 (MMR_HSR1); PF02421 (FeoB_N); PF02824 (TGS); PF16897 (MMR_HSR1_Xtn)
InterPro	-
eggNOG	-
NR	GeneID:131014803

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057798874.1`
2	Cytosol	细胞质基质	0.20000	`XP_057798874.1`
3	Nucleus	细胞核	0.20000	`XP_057798875.1`
4	Chromosome	染色体	0.00000	`XP_057798874.1`
5	Centromere	着丝粒	0.00000	`XP_057798874.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:58522113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B122,B50
`Chr3:58522918`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr3:58522965`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr3:58522985`	`TG`	`T`	1bp_deletion	frameshift_variant	14	A1,B27,B33,B34,B54,B69,B74,C13,C17,C24,C29,C41,C55,C76
`Chr3:58523387`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B65,C40,C50
`Chr3:58524320`	`G`	`GA`	1bp_insertion	frameshift_variant	27	A10,A7,A8,B11,B121,B122,B134,B16,B17,B33,B40,B41,B49,B65,B79,B80,B88,B94,C15,C22,C36,C40,C50,C58,C87,D3,D9
`Chr3:58524337`	`C`	`T`	EMS_canonical_SNV	stop_gained	31	A19,A20,B105,B113,B130,B132,B27,B30,B36,B41,B51,B72,B73,B77,B99,C10,C11,C12,C14,C16,C17,C26,C30,C37,C38,C44,C51,C69,C71,C74,C8
`Chr3:58524934`	`G`	`GT`	1bp_insertion	stop_gained,frameshift_variant	4	B119,B137,C80,C84
`Chr3:58524934`	`G`	`GT`	1bp_insertion	CDS_variant	4	B119,B137,C80,C84
`Chr3:58524940`	`G`	`GGT`	2bp_insertion	frameshift_variant	4	B119,B137,C80,C84
`Chr3:58524940`	`G`	`GGT`	2bp_insertion	CDS_variant	4	B119,B137,C80,C84
`Chr3:58524944`	`C`	`CAG`	2bp_insertion	frameshift_variant	4	B119,B137,C80,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798874.1

374 aa

187

374

FeoB_N

MMR_HSR1

MMR_HSR1_Xtn

TGS

PF02421 FeoB_N 66-152 aa PF01926 MMR_HSR1 67-171 aa PF16897 MMR_HSR1_Xtn 186-291 aa PF02824 TGS 293-352 aa

XP_057798875.1

368 aa

184

368

FeoB_N

MMR_HSR1

MMR_HSR1_Xtn

TGS

PF02421 FeoB_N 66-152 aa PF01926 MMR_HSR1 67-171 aa PF16897 MMR_HSR1_Xtn 186-291 aa PF02824 TGS 293-366 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798874.1`	Pfam	`PF02421`	FeoB_N	Domain	66	152	8.6e-12	45.6	Ferrous iron transport protein B
`XP_057798874.1`	Pfam	`PF01926`	MMR_HSR1	Family	67	171	3.6e-23	82.5	50S ribosome-binding GTPase
`XP_057798874.1`	Pfam	`PF16897`	MMR_HSR1_Xtn	Family	186	291	3e-41	140.4	C-terminal region of MMR_HSR1 domain
`XP_057798874.1`	Pfam	`PF02824`	TGS	Domain	293	352	9.1e-11	42.4	TGS domain
`XP_057798875.1`	Pfam	`PF02421`	FeoB_N	Domain	66	152	8.2e-12	45.6	Ferrous iron transport protein B
`XP_057798875.1`	Pfam	`PF01926`	MMR_HSR1	Family	67	171	3.4e-23	82.6	50S ribosome-binding GTPase
`XP_057798875.1`	Pfam	`PF16897`	MMR_HSR1_Xtn	Family	186	291	2.7e-41	140.6	C-terminal region of MMR_HSR1 domain
`XP_057798875.1`	Pfam	`PF02824`	TGS	Domain	293	366	1.5e-19	70.5	TGS domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009098326.1
TTTTGTTCATTCTCCCCCCTTTGAGCTCCTGCGAAATACCGGTTACGGATTCTCGCTCCCAATCTAACGCCGTCGTTTTTAGAGGTTATCGCTCTCAGCAAAAATGGCGACAATTATGCAGAAAATCAAGGACATCGAAGATGAGATGGCAAGAACCCAGAAAAACAAAGCTACTGCTCATCATCTTGGCCTGTTGAAGGCAAAACTAGCAAAGCTTCGGCGGGAAATTCTCACACCAACCTCAAAGGGAGGTGGTGGTG...

XM_057942892.1
TTAACGGCCCATAAAGTACACCCAAATCCAAGTTGGACCCGTGACCGGCCCATCAATAAACAATTCGAGTTTCCAGAATTCTCTCCATTTTTAGGGCCTGTTTGGGTAAAATTTGATGTACATTTTGTTCATTCTCCCCCCTTTGAGCTCCTGCGAAATACCGGTTACGGATTCTCGCTCCCAATCTAACGCCGTCGTTTTTAGAGGTTATCGCTCTCAGCAAAAATGGCGACAATTATGCAGAAAATCAAGGACATCGA...

CDS

2 records

下载 CDS FASTA

LOC131014803
ATGGCGACAATTATGCAGAAAATCAAGGACATCGAAGATGAGATGGCAAGAACCCAGAAAAACAAAGCTACTGCTCATCATCTTGGCCTGTTGAAGGCAAAACTAGCAAAGCTTCGGCGGGAAATTCTCACACCAACCTCAAAGGGAGGTGGTGGTGCTGGAGAAGGTTTTGATGTAACAAAAAGTGGTGATTCAAGAGTTAGGCTTGTGGGCTTCCCTTCAGTTGGGAAATCAACACTTTTAAACAAATTAACTGGCAC...

Protein

2 records

下载 Protein FASTA

XP_057798874.1
MATIMQKIKDIEDEMARTQKNKATAHHLGLLKAKLAKLRREILTPTSKGGGGAGEGFDVTKSGDSRVRLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLSFRRKDKGGINPTSTINNTNLDIDTVKAICGEYRIHNADINLRYDATADDLIDVIEGSRVYMPCIYVVNKIDQITLEELEI...

XP_057798875.1
MATIMQKIKDIEDEMARTQKNKATAHHLGLLKAKLAKLRREILTPTSKGGGGAGEGFDVTKSGDSRVRLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLSFRRKDKGGINPTSTINNTNLDIDTVKAICGEYRIHNADINLRYDATADDLIDVIEGSRVYMPCIYVVNKIDQITLEELEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器