Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003956`

染色体: Chr03 坐标: 58598636-58604749 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003956`
名称	SmilChr03G003956
描述	protein FLOWERING LOCUS D
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	58598636 - 58604749 / `-`

ID 对照

NCBI Gene ID	`LOC131014798`
GeneID	`131014798`
locus_tag	`-`
NCBI Name	`LOC131014798`
原始查询	`SmilChr03G003956`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FLOWERING LOCUS D
产物	protein FLOWERING LOCUS D
Arabidopsis	`AT3G10390` (FLD) protein FLOWERING locus D-like protein [Source:NCBI gene (formerly Entrezgene);Acc:820202] identity=66.2; qcov=0.925; evalue=0; confidence=high
Rice	`Os04g0560300` (OsHDMA701) - identity=70.9; qcov=0.802; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0016491 (oxidoreductase activity)
KEGG	-
Pfam	PF01593 (Amino_oxidase); PF04433 (SWIRM); PF13450 (NAD_binding_8)
InterPro	-
eggNOG	-
NR	GeneID:131014798

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798869.1`
2	Cytosol	细胞质基质	0.80000	`XP_057798870.1`
3	Cytoplasm	细胞质	0.40000	`XP_057798870.1`
4	Chromosome	染色体	0.00000	`XP_057798869.1`
5	Centromere	着丝粒	0.00000	`XP_057798869.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:58600375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:58600405`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B17,D9
`Chr3:58600570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr3:58600796`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr3:58600801`	`G`	`A`	EMS_canonical_SNV	stop_gained	15	A15,A16,B123,B48,B50,B60,B82,B88,B91,C27,C42,C60,C82,C86,C87
`Chr3:58600878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B121
`Chr3:58600885`	`G`	`A`	EMS_canonical_SNV	stop_gained	8	B30,B42,B43,B5,B98,C20,C29,D11
`Chr3:58601049`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr3:58601500`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B35,B69,C23
`Chr3:58602141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B22,D4
`Chr3:58602963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A25
`Chr3:58603762`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798869.1

1120 aa

560

1120

SWIRM

NAD_binding_8

Amino_oxidase

PF04433 SWIRM 169-243 aa PF13450 NAD_binding_8 264-322 aa PF01593 Amino_oxidase 269-691 aa

XP_057798870.1

914 aa

457

914

SWIRM

NAD_binding_8

Amino_oxidase

PF04433 SWIRM 169-243 aa PF13450 NAD_binding_8 264-322 aa PF01593 Amino_oxidase 269-691 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798869.1`	Pfam	`PF04433`	SWIRM	Domain	169	243	2.4e-14	54.0	SWIRM domain
`XP_057798869.1`	Pfam	`PF13450`	NAD_binding_8	Domain	264	322	1.6e-11	45.1	NAD(P)-binding Rossmann-like domain
`XP_057798869.1`	Pfam	`PF01593`	Amino_oxidase	Domain	269	691	1.7e-85	288.7	Flavin containing amine oxidoreductase
`XP_057798870.1`	Pfam	`PF04433`	SWIRM	Domain	169	243	1.9e-14	54.3	SWIRM domain
`XP_057798870.1`	Pfam	`PF13450`	NAD_binding_8	Domain	264	322	1.3e-11	45.3	NAD(P)-binding Rossmann-like domain
`XP_057798870.1`	Pfam	`PF01593`	Amino_oxidase	Domain	269	691	1e-85	289.4	Flavin containing amine oxidoreductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009098324.1
TATTATCACGGCGCAATTCCATTCCTAAAGAAAAACGCCCTAATTCCTAAATTCTCAATTTGGCCCTCTTAAATAAAAAGTAAAATGAACAAAACTCTCCAATGGCGTTCTCTGCAACTGATTTCTTGATTTTACGATTGCAAACTGTTTGATGGATTCACCAAGCCAAAACCCTAATCCTCCAACCTCTAATCAGCTCGACGTTTCTCACCAATCCGCTGTTCATCCCAATTCTCCATGTTCCAACCCCACTGCCGCTC...

XR_009098321.1
TTATCACGGCGCAATTCCATTCCTAAAGAAAAACGCCCTAATTCCTAAATTCTCAATTTGGCCCTCTTAAATAAAAAGTAAAATGAACAAAACTCTCCAATGGCGTTCTCTGCAACTGATTTCTTGATTTTACGATTGCAAACTGTTTGATGGATTCACCAAGCCAAAACCCTAATCCTCCAACCTCTAATCAGCTCGACGTTTCTCACCAATCCGCTGTTCATCCCAATTCTCCATGTTCCAACCCCACTGCCGCTCGT...

CDS

2 records

下载 CDS FASTA

LOC131014798
ATGGATTCACCAAGCCAAAACCCTAATCCTCCAACCTCTAATCAGCTCGACGTTTCTCACCAATCCGCTGTTCATCCCAATTCTCCATGTTCCAACCCCACTGCCGCTCGTCACTCCAATTTGAATCCCAACATTGTGCAAAACCATAGTTCAGATGCCAATTCAGTCCATGATCACTTCCTTTCTGCGGCGATACCGAAAGGTAAAAGGCGCGGCCGGTCCCGGAACTTGACGTCGCCCCAAAACCTTGTAAGGCTGTC...

Protein

2 records

下载 Protein FASTA

XP_057798869.1
MDSPSQNPNPPTSNQLDVSHQSAVHPNSPCSNPTAARHSNLNPNIVQNHSSDANSVHDHFLSAAIPKGKRRGRSRNLTSPQNLVRLSTLSLNCGVSNAGASLVGSSSGQVNRAQLQNRGNLVSKKHGSSSNSATPTKKSVDDMSDEIIVINKDATAEALIALTSGFPADSLTDEEIDYGVVSVVGGIEQVNYILIRNHIITKWRENVSSWITKEMFVDIVPKHCGPLLDKAYGYLVSHGYINFGVAPEIKERILVDPKQP...

XP_057798870.1
MDSPSQNPNPPTSNQLDVSHQSAVHPNSPCSNPTAARHSNLNPNIVQNHSSDANSVHDHFLSAAIPKGKRRGRSRNLTSPQNLVRLSTLSLNCGVSNAGASLVGSSSGQVNRAQLQNRGNLVSKKHGSSSNSATPTKKSVDDMSDEIIVINKDATAEALIALTSGFPADSLTDEEIDYGVVSVVGGIEQVNYILIRNHIITKWRENVSSWITKEMFVDIVPKHCGPLLDKAYGYLVSHGYINFGVAPEIKERILVDPKQP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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