Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003958`

染色体: Chr03 坐标: 58619160-58636183 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003958`
名称	SmilChr03G003958
描述	exocyst complex component SEC8
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	58619160 - 58636183 / `+`

ID 对照

NCBI Gene ID	`LOC131014814`
GeneID	`131014814`
locus_tag	`-`
NCBI Name	`LOC131014814`
原始查询	`SmilChr03G003958`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	exocyst complex component SEC8
产物	exocyst complex component SEC8
Arabidopsis	`AT3G10380` (SEC8) subunit of exocyst complex 8 [Source:NCBI gene (formerly Entrezgene);Acc:820201] identity=69.4; qcov=1.01; evalue=0; confidence=high
Rice	`Os08g0318500` (Cen8.t01153) - identity=64.5; qcov=1.01; evalue=0; confidence=high
GO	GO:0000145 (exocyst); GO:0006887 (exocytosis); GO:0006893 (Golgi to plasma membrane transport); GO:0006904 (GO:0006904); GO:0090522 (GO:0090522)
KEGG	-
Pfam	PF04048 (Sec8_N); PF10475 (Vps54_N); PF20651 (EXOC6_Sec15_N)
InterPro	-
eggNOG	-
NR	GeneID:131014814

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Clathrin-coated vesicle	Clathrin-coated vesicle	0.80000	`XP_057798893.1`
2	Cytosol	细胞质基质	0.80000	`XP_057798893.1`
3	Golgi apparatus	高尔基体	0.80000	`XP_057798893.1`
4	Trans-golgi network	Trans-golgi network	0.80000	`XP_057798893.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.60000	`XP_057798893.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:58620810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:58620865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,C18,D8
`Chr3:58624202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr3:58625881`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr3:58626001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr3:58626009`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B35,B69,C23
`Chr3:58626136`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B9
`Chr3:58626136`	`GA`	`G`	1bp_deletion	CDS_variant	1	B9
`Chr3:58627897`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B40,D3
`Chr3:58627920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,B24,B26
`Chr3:58631770`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,A8,B93
`Chr3:58634591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B130,B67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798893.1

1058 aa

529

1058

Sec8_N

Vps54_N

EXOC6_Sec15_N

PF04048 Sec8_N 16-151 aa PF10475 Vps54_N 28-205 aa PF20651 EXOC6_Sec15_N 61-220 aa

XP_057798894.1

1058 aa

529

1058

Sec8_N

Vps54_N

EXOC6_Sec15_N

PF04048 Sec8_N 16-151 aa PF10475 Vps54_N 28-205 aa PF20651 EXOC6_Sec15_N 61-220 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798893.1`	Pfam	`PF04048`	Sec8_N	Repeat	16	151	2e-36	125.7	Exocyst complex component Sec8 N-terminal
`XP_057798893.1`	Pfam	`PF10475`	Vps54_N	Repeat	28	205	2.1e-06	28.0	Vacuolar-sorting protein 54, of GARP complex
`XP_057798893.1`	Pfam	`PF20651`	EXOC6_Sec15_N	Repeat	61	220	4.9e-07	30.5	Exocyst complex component EXOC6/Sec15, N-terminal
`XP_057798894.1`	Pfam	`PF04048`	Sec8_N	Repeat	16	151	2e-36	125.7	Exocyst complex component Sec8 N-terminal
`XP_057798894.1`	Pfam	`PF10475`	Vps54_N	Repeat	28	205	2.1e-06	28.0	Vacuolar-sorting protein 54, of GARP complex
`XP_057798894.1`	Pfam	`PF20651`	EXOC6_Sec15_N	Repeat	61	220	4.9e-07	30.5	Exocyst complex component EXOC6/Sec15, N-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942910.1
CAATCAACATTTTCCAGCTCACTCGTTTCCAGTAATCAAAATAAAGAGTCTTATTATTGTAAAAAACGAAAATTAAATGTCCGAAAACATTTATTTGCAGAAATTAAATCAATTATCTGATCCATTTTCATCAATCCATAATTTGACAGATCCAGAGTTGGAATTTAGCTGATTGGATTGAGATGTCAATCTTCGACGGGCTCCCCATTCCGAAAGATAAATCGTTTTTAAAGGAAGAACTTTCTAGAATAGATGAAAGT...

XM_057942911.1
TTCTCTTCCATTATTGCTTGAGTTGGAATTTAGCTGATTGGATTGAGATGTCAATCTTCGACGGGCTCCCCATTCCGAAAGATAAATCGTTTTTAAAGGAAGAACTTTCTAGAATAGATGAAAGTTGGGCGGCAGCGCGCTTTGATTCATTGCCTCATGTTGTGCACATTTTGACATCCAAAGACCGTGAAGGGGAAGTGAAGGTCTTAAAGGAGCAAAGCGATATCATTGAAGAAGTTGTTGATGAAGTTGTTCATGCA...

CDS

2 records

下载 CDS FASTA

LOC131014814
ATGTCAATCTTCGACGGGCTCCCCATTCCGAAAGATAAATCGTTTTTAAAGGAAGAACTTTCTAGAATAGATGAAAGTTGGGCGGCAGCGCGCTTTGATTCATTGCCTCATGTTGTGCACATTTTGACATCCAAAGACCGTGAAGGGGAAGTGAAGGTCTTAAAGGAGCAAAGCGATATCATTGAAGAAGTTGTTGATGAAGTTGTTCATGCATATCATAGTGGCTTTAACAAAGCAATTCAAAATTATTCTCAGATTTT...

Protein

2 records

下载 Protein FASTA

XP_057798893.1
MSIFDGLPIPKDKSFLKEELSRIDESWAAARFDSLPHVVHILTSKDREGEVKVLKEQSDIIEEVVDEVVHAYHSGFNKAIQNYSQILRLFSESAQSLGELKVDLAQAKKLLGAHNKQLHQLWYRSVTLRHIISLLDQVEGIAKVPARIEKLIAEKQFYAAVQLHVQSSLMLEREGLQAVGALQDVRSELTKLRGAFFYKVLEDLHSHLYNKGEYSSVVSSMLESDDAIPTATAVTSSMNYSHSLSRRTRLLKGDGDGVYR...

XP_057798894.1
MSIFDGLPIPKDKSFLKEELSRIDESWAAARFDSLPHVVHILTSKDREGEVKVLKEQSDIIEEVVDEVVHAYHSGFNKAIQNYSQILRLFSESAQSLGELKVDLAQAKKLLGAHNKQLHQLWYRSVTLRHIISLLDQVEGIAKVPARIEKLIAEKQFYAAVQLHVQSSLMLEREGLQAVGALQDVRSELTKLRGAFFYKVLEDLHSHLYNKGEYSSVVSSMLESDDAIPTATAVTSSMNYSHSLSRRTRLLKGDGDGVYR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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