当前解析结果
SmilChr03G003960| 统一新 Gene ID | SmilChr03G003960 |
|---|---|
| 名称 | SmilChr03G003960 |
| 描述 | kinesin-like protein KIN-UC |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 58638148 - 58646417 / - |
| NCBI Gene ID | LOC131014815 |
|---|---|
| GeneID | 131014815 |
| locus_tag | - |
| NCBI Name | LOC131014815 |
| 原始查询 | SmilChr03G003960 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-UC |
| 产物 | kinesin-like protein KIN-UC |
| Arabidopsis | AT3G54870 (MRH2)Armadillo/beta-catenin repeat family protein / kinesin motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:824652] identity=57.6; qcov=0.946; evalue=0; confidence=high |
| Rice | Os03g0152900 (KINUA)- identity=55.5; qcov=0.558; evalue=0; confidence=medium |
| GO | GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding); GO:0008574 (plus-end-directed microtubule motor activity) |
| KEGG | - |
| Pfam | PF00225 (Kinesin); PF00514 (Arm); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014815 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057798895.1 |
| 2 | Phragmoplast | Phragmoplast | 1.00000 | XP_057798895.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057798895.1 |
| 4 | Spindle | Spindle | 0.60000 | XP_057798895.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057798895.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:58638420 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B101 |
Chr3:58638462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:58638647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B6,C34 |
Chr3:58638658 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr3:58638712 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B101,B15,C18,D8 |
Chr3:58638829 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B6,C34 |
Chr3:58638874 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B48,B78,C78 |
Chr3:58638928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B17,D9 |
Chr3:58639049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B24,B26 |
Chr3:58639068 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr3:58639930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:58640612 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B64,B95 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057798895.1PF16796
Microtub_bd 75-215 aa
PF00225
Kinesin 80-413 aa
PF00514
Arm 855-891 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798895.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 75 | 215 | 5.2e-18 | 66.1 | Microtubule binding |
XP_057798895.1 |
Pfam | PF00225 |
Kinesin | Domain | 80 | 413 | 5.7e-97 | 325.3 | Kinesin motor domain |
XP_057798895.1 |
Pfam | PF00514 |
Arm | Repeat | 855 | 891 | 3.3e-17 | 62.6 | Armadillo/beta-catenin-like repeat |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。