Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003961`

染色体: Chr03 坐标: 58652800-58656017 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003961`
名称	SmilChr03G003961
描述	uncharacterized SmilChr03G003961
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	58652800 - 58656017 / `-`

ID 对照

NCBI Gene ID	`LOC131014817`
GeneID	`131014817`
locus_tag	`-`
NCBI Name	`LOC131014817`
原始查询	`SmilChr03G003961`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	peptidyl-prolyl cis-trans isomerase [Source:NCBI gene (formerly Entrezgene);Acc:827415]; symbol=AT4G17070; hit=AT4G17070; species=arabidopsis; confidence=high
产物	peptidyl-prolyl cis-trans isomerase [Source:NCBI gene (formerly Entrezgene);Acc:827415]; symbol=AT4G17070; hit=AT4G17070; species=arabidopsis; confidence=high
Arabidopsis	`AT4G17070` (AT4G17070) peptidyl-prolyl cis-trans isomerase [Source:NCBI gene (formerly Entrezgene);Acc:827415] identity=62.4; qcov=0.977; evalue=7.86e-163; confidence=high
Rice	`Os03g0100300` (OsCYP35) - identity=62.1; qcov=0.763; evalue=3.04e-126; confidence=high
GO	GO:0000413 (protein peptidyl-prolyl isomerization); GO:0003755 (peptidyl-prolyl cis-trans isomerase activity)
KEGG	-
Pfam	PF00160 (Pro_isomerase)
InterPro	-
eggNOG	-
NR	GeneID:131014817

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057798896.1`
2	Trans-golgi network	Trans-golgi network	0.20000	`XP_057798896.1`
3	Vacuole	液泡	0.20000	`XP_057798896.1`
4	Nucleus	细胞核	0.00000	`XP_057798896.1`
5	Chromosome	染色体	0.00000	`XP_057798896.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:58653364`	`C`	`CT`	1bp_insertion	frameshift_variant	1	C38
`Chr3:58653364`	`C`	`CT`	1bp_insertion	CDS_variant	1	C38
`Chr3:58653367`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B124,B17,B75,C83,D9
`Chr3:58653422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B6,C34
`Chr3:58653447`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr3:58653493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:58653520`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	C11,C69,C74,D2
`Chr3:58653520`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C11,C69,C74,D2
`Chr3:58653945`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,C18,D8
`Chr3:58653976`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B8,B85,C33,D6
`Chr3:58654724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr3:58655239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C25,C35,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798896.1

346 aa

173

346

Pro_isomerase

PF00160 Pro_isomerase 170-324 aa

XP_057798897.1

346 aa

173

346

Pro_isomerase

PF00160 Pro_isomerase 170-324 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798896.1`	Pfam	`PF00160`	Pro_isomerase	Domain	170	324	5.2e-12	47.0	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
`XP_057798897.1`	Pfam	`PF00160`	Pro_isomerase	Domain	170	324	5.2e-12	47.0	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942914.1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGGGAGATGGCACCGAAATTTATTGAGCTGTGGAATCACAAAACTGGGCTCTTAGTCAACGCTTCCATTCCACCACATGCAATCAGATTACAAAACCCCAAAGAAATAAAACTAAATTAAAGAAAATTCCACCACAGCTCGTCGGAGAGCAAAAATCAACCCCCATTTATACGCTTCGCCGTCGTCTCCCCCGCAGCTGGTCAAATATGGGAGAATTTG...

XM_057942913.1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGGGAGATGGCACCGAAATTTATTGAGCTGTGGAATCACAAAACTGGGCTCTTAGTCAACGCTTCCATTCCACCACATGCAATCAGATTACAAAACCCCAAAGAAATAAAACTAAATTAAAGAAAATTCCACCACAGCTCGTCGGAGAGCAAAAATCAACCCCCATTTATACGCTTCGCCGTCGTCTCCCCCGCAGCTGGTCAAATATGGGAGAATTTG...

CDS

2 records

下载 CDS FASTA

LOC131014817
ATGGTTCGGAGGGGAAGTGAAGTGGAGCCGGCGAGGTGGGGGTCTATGGTGCTTCTGTTTATGGGTTTGGTCTCTTTCTGTATGGTCTATGTTTTCATGTCAACTGTGATGAGACCCTCGTCGTCTGGCGATTCAAAGATGAGTTCTTTAGGGTTTGGTGATGGAAATGGTGGGAATTCGGAGGTGGTGGAGGTGAGTGGAGGTGGGGGTTGTTGTAGAGGGATCCCGAAATTGGAGCTGTGGGGTGCTGCTGTCAAGTG...

Protein

2 records

下载 Protein FASTA

XP_057798896.1
MVRRGSEVEPARWGSMVLLFMGLVSFCMVYVFMSTVMRPSSSGDSKMSSLGFGDGNGGNSEVVEVSGGGGCCRGIPKLELWGAAVKWGTDFKFNSSEQCCEACKAMCTGKDGPCLCDSWVFCGNKEACGEKFGECWLKKQKDVLLPEKQDTGNKIKWTSGIIFGRGEGIIALETEYGTLHIKLLPDCSPHSVAYMLELLALRHCAGCHFYRAESRGQFWDIKGNHIKDASYGPPFALIQGTLEALAVTFDPIPSEHCPTI...

XP_057798897.1
MVRRGSEVEPARWGSMVLLFMGLVSFCMVYVFMSTVMRPSSSGDSKMSSLGFGDGNGGNSEVVEVSGGGGCCRGIPKLELWGAAVKWGTDFKFNSSEQCCEACKAMCTGKDGPCLCDSWVFCGNKEACGEKFGECWLKKQKDVLLPEKQDTGNKIKWTSGIIFGRGEGIIALETEYGTLHIKLLPDCSPHSVAYMLELLALRHCAGCHFYRAESRGQFWDIKGNHIKDASYGPPFALIQGTLEALAVTFDPIPSEHCPTI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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