Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003968`

染色体: Chr03 坐标: 58724951-58735781 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003968`
名称	SmilChr03G003968
描述	amino acid transporter AVT1C-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	58724951 - 58735781 / `+`

ID 对照

NCBI Gene ID	`LOC131014825`
GeneID	`131014825`
locus_tag	`-`
NCBI Name	`LOC131014825`
原始查询	`SmilChr03G003968`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	amino acid transporter AVT1C-like
产物	amino acid transporter AVT1C-like
Arabidopsis	`AT2G39130` (AT2G39130) Transmembrane amino acid transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:818499] identity=66.9; qcov=1; evalue=0; confidence=high
Rice	`Os02g0101000` (OsATL11) - identity=60.2; qcov=0.915; evalue=0; confidence=high
GO	GO:0005886 (plasma membrane)
KEGG	smil04082 (Neuroactive ligand signaling - Salvia miltiorrhiza (redroot sage))
Pfam	PF01490 (Aa_trans)
InterPro	-
eggNOG	-
NR	GeneID:131014825

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057798911.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057798911.1`
3	Nucleus	细胞核	0.00000	`XP_057798911.1`
4	Chromosome	染色体	0.00000	`XP_057798911.1`
5	Centromere	着丝粒	0.00000	`XP_057798911.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:58731872`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C58
`Chr3:58731872`	`TA`	`T`	1bp_deletion	CDS_variant	1	C58
`Chr3:58732461`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr3:58732542`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:58732893`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B46,D6
`Chr3:58733031`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B9,C77
`Chr3:58733037`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:58734016`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr3:58734258`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B91,C13,C82
`Chr3:58734289`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B91,C13,C82
`Chr3:58734355`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,B27,B35
`Chr3:58734631`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B111,C29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798911.1

550 aa

275

550

Aa_trans

PF01490 Aa_trans 161-541 aa

XP_057798912.1

550 aa

275

550

Aa_trans

PF01490 Aa_trans 161-541 aa

XP_057798913.1

550 aa

275

550

Aa_trans

PF01490 Aa_trans 161-541 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798911.1`	Pfam	`PF01490`	Aa_trans	Domain	161	541	7.3e-69	233.1	Transmembrane amino acid transporter protein
`XP_057798912.1`	Pfam	`PF01490`	Aa_trans	Domain	161	541	7.3e-69	233.1	Transmembrane amino acid transporter protein
`XP_057798913.1`	Pfam	`PF01490`	Aa_trans	Domain	161	541	7.3e-69	233.1	Transmembrane amino acid transporter protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942928.1
TCGGCCCGTTGGGCCGTTAACCTTAACACTGTCCAATCTTTTCCTCTCCTGTCTCAACTTCACCCTCACAAATCACAAACCCATCAACCTTTTAGAAATAAAATCACAAAAAACCAAGTAAATGTGGAGAGAGATCACAACTAAAAAAAAAATTAAAAAAATGTAAAGAGAGATCAAATTATGACAGTAGCTTTACACAAGGGGCAAGTGTTATTGACATTGAGCCAATTGTTGATGCAGCGTGGGTGATATTGATGCGC...

XM_057942930.1
TGTAAACGTGGAGTTGTCTCTGATAAGGTGATGTAAGGTTGTTGCTATAAATATTCAACAGAAAGTGAGATTTGAATTGGATTTGAAGCTTTTGAAGGAAGTGGATAGACAGAGACATACACAATGAAGAATTCTGCCTCCGATCAGAGTTTCTACATCGAAAGCGAGGGAGATGACGATGAGAATTCATACAAAGATGGAGATGGGAGTGATTCCGATCATTCAAATGACCTCAACGACGACGACGACAACAATCGCGA...

CDS

3 records

下载 CDS FASTA

LOC131014825
ATGAAGAATTCTGCCTCCGATCAGAGTTTCTACATCGAAAGCGAGGGAGATGACGATGAGAATTCATACAAAGATGGAGATGGGAGTGATTCCGATCATTCAAATGACCTCAACGACGACGACGACAACAATCGCGAGAGCAAGACGGGTTCTTTGAACCCTACCTGGCCTCAAAGTTACAGGCAAACCATAGATTTGTATGGTAGTCTTCCATCTCCGAGCCTTACCTTCTTGGGGCCACCATCAATATCACAATTGGG...

Protein

3 records

下载 Protein FASTA

XP_057798911.1
MKNSASDQSFYIESEGDDDENSYKDGDGSDSDHSNDLNDDDDNNRESKTGSLNPTWPQSYRQTIDLYGSLPSPSLTFLGPPSISQLGSSFLSSSLIRRHTPDRLPSFIRPLLPPVEAEKPKDPRGSYYMPSPAISRKSSLRKAVLDKRASIAHEPPVSYQSTYGQAVLNGMNVLCGVGILSTPYAIREGGWIGLGILMLFACLSYYTGILLRHCLDSQPGLETYPDIGQAAFGITGRICISIILYVELYACCVEYIILES...

XP_057798912.1
MKNSASDQSFYIESEGDDDENSYKDGDGSDSDHSNDLNDDDDNNRESKTGSLNPTWPQSYRQTIDLYGSLPSPSLTFLGPPSISQLGSSFLSSSLIRRHTPDRLPSFIRPLLPPVEAEKPKDPRGSYYMPSPAISRKSSLRKAVLDKRASIAHEPPVSYQSTYGQAVLNGMNVLCGVGILSTPYAIREGGWIGLGILMLFACLSYYTGILLRHCLDSQPGLETYPDIGQAAFGITGRICISIILYVELYACCVEYIILES...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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