Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003972`

染色体: Chr03 坐标: 58748231-58751256 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003972`
名称	SmilChr03G003972
描述	serine/threonine-protein kinase PCRK1-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	58748231 - 58751256 / `-`

ID 对照

NCBI Gene ID	`LOC131014830`
GeneID	`131014830`
locus_tag	`-`
NCBI Name	`LOC131014830`
原始查询	`SmilChr03G003972`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein kinase PCRK1-like
产物	serine/threonine-protein kinase PCRK1-like
Arabidopsis	`AT3G09830` (AT3G09830) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820141] identity=65.5; qcov=0.897; evalue=0; confidence=high
Rice	`Os02g0819600` (OsRLCK88) - identity=60.3; qcov=0.998; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131014830

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057798922.1`
2	Nucleus	细胞核	0.00000	`XP_057798922.1`
3	Chromosome	染色体	0.00000	`XP_057798922.1`
4	Centromere	着丝粒	0.00000	`XP_057798922.1`
5	Chromatin	染色质	0.00000	`XP_057798922.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:58748536`	`CGG`	`C`	2bp_deletion	frameshift_variant	14	A10,A14,A21,B109,B19,B24,B42,B43,B49,B79,B97,C5,C58,C85
`Chr3:58748544`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr3:58748551`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,B73,C43,C49,D5
`Chr3:58748558`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B125
`Chr3:58748563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C2
`Chr3:58748572`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A8,B111,B99,C29
`Chr3:58748576`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B21,B64,B87,C75,C76
`Chr3:58748621`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B57,C34,C72
`Chr3:58748760`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A23,C53,C56
`Chr3:58748775`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A4,B26
`Chr3:58749219`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C85,D7
`Chr3:58749506`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A5,B32,C73,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798922.1

427 aa

214

427

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 88-362 aa PF07714 PK_Tyr_Ser-Thr 88-362 aa

XP_057798923.1

427 aa

214

427

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 88-362 aa PF07714 PK_Tyr_Ser-Thr 88-362 aa

XP_057798924.1

427 aa

214

427

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 88-362 aa PF07714 PK_Tyr_Ser-Thr 88-362 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798922.1`	Pfam	`PF00069`	Pkinase	Domain	88	362	8.7e-46	157.2	Protein kinase domain
`XP_057798922.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	88	362	1.7e-46	159.3	Protein tyrosine and serine/threonine kinase
`XP_057798923.1`	Pfam	`PF00069`	Pkinase	Domain	88	362	8.7e-46	157.2	Protein kinase domain
`XP_057798923.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	88	362	1.7e-46	159.3	Protein tyrosine and serine/threonine kinase
`XP_057798924.1`	Pfam	`PF00069`	Pkinase	Domain	88	362	8.7e-46	157.2	Protein kinase domain
`XP_057798924.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	88	362	1.7e-46	159.3	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942941.1
AGTGCCCAATTTCCATTTCCAAGTAGTACACACCTCTCTCTCTCTCTCTCTTGATGCATCTTTTTGTTTTGTCTTGATTCTTGCTTGGTATGAAAATGGCATTTCACATTCAGATGATTTCATCTTCAACCAAATTAATTCCTTCCACATAAAGCAAAAGCCTTGTCGTCTCAAATCATGGTCCCAAAACAAGAAAAAGAATAATCTTTTTGTCTTTGTCCAAATATTTGTTTTAAAAATGTATGCTCCATGATTCATCA...

XM_057942940.1
TGCCCAATTTCCATTTCCAAGTAGTACACACCTCTCTCTCTCTCTCTCTTGATGCATCTTTTTGTTTTGTCTTGATTCTTGCTTGGTATGAAAATGGCATTTCACATTCAGATGATTTCATCTTCAACCAAATTAATTCCTTCCACATAAAGCAAAAGCCTTGTCGTCTCAAATCATGGTCCCAAAACAAGAAAAAGAATAATCTTTTTGTCTTTGTCCAAATATTTGTTTTAAAAATGTATGCTCCATGATTCATCACT...

CDS

3 records

下载 CDS FASTA

LOC131014830
ATGAGGTGCTTTCACTTCTCCAATGGTCATAATACTGATGAGCCACAGACCACGAAATTCGCATCAGGTGGCTCGTCCACGTCCATGTCCACGTCCACGGATCTTGATGTCAGAAAACTAGGGTCGGAGAACGTATCAGACATAAGCAGCGCGTCGTCTGCTAAGATCTCGTTCGCTAGCCTGTCTCAGAAGCACAGCAACCTCAGGGTGTTCACATTTGCAGAGCTGAAAGCTGCAACGAAGAGCTTCAGCCGCGCCCT...

Protein

3 records

下载 Protein FASTA

XP_057798922.1
MRCFHFSNGHNTDEPQTTKFASGGSSTSMSTSTDLDVRKLGSENVSDISSASSAKISFASLSQKHSNLRVFTFAELKAATKSFSRALMLGEGGFGPVYRGVLREKADSSKRIDIAVKQLSSRGLQGHKEWVTEVNVLGIVDHPNLVKLVGYCAEDDERGIQRLLVYEYMPNRSVQDHISSRFHAPLPWATRLKVAQDAAKGLAYLHEGMEFQIIFRDFKSSNILLDEQWSAKLSDFGLAKLGPADGLSHVSTAVVGTVGY...

XP_057798923.1
MRCFHFSNGHNTDEPQTTKFASGGSSTSMSTSTDLDVRKLGSENVSDISSASSAKISFASLSQKHSNLRVFTFAELKAATKSFSRALMLGEGGFGPVYRGVLREKADSSKRIDIAVKQLSSRGLQGHKEWVTEVNVLGIVDHPNLVKLVGYCAEDDERGIQRLLVYEYMPNRSVQDHISSRFHAPLPWATRLKVAQDAAKGLAYLHEGMEFQIIFRDFKSSNILLDEQWSAKLSDFGLAKLGPADGLSHVSTAVVGTVGY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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