当前解析结果
SmilChr03G003974| 统一新 Gene ID | SmilChr03G003974 |
|---|---|
| 名称 | SmilChr03G003974 |
| 描述 | ABC transporter G family member 24-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 58766937 - 58772361 / + |
| NCBI Gene ID | LOC131014832 |
|---|---|
| GeneID | 131014832 |
| locus_tag | - |
| NCBI Name | LOC131014832 |
| 原始查询 | SmilChr03G003974 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member 24-like |
| 产物 | ABC transporter G family member 24-like |
| Arabidopsis | AT1G53390 (ABCG24)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841775] identity=60.3; qcov=0.988; evalue=0; confidence=high |
| Rice | Os11g0416900 (OsABCG28)- identity=56.4; qcov=0.981; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014832 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057798927.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057798929.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057798929.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057798928.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057798928.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:58767156 |
G |
GGT |
2bp_insertion | frameshift_variant | 144 | A1,A10,A13,A15,A18,A19,A2,A20,A21,A22,A23,A3,A4,A5,A6,A8,B1,B10,B100,B101,B105,B106,B11,B110,B114,B118,B119,B12,B120,B125,B126,B127,B128,B13,B130,B131,B134,B135,B136,B137,B14,B17,B18,B19,B2,B20,B21,B22,B23,B29,B3,B30,B31,B32,B33,B34,B35,B36,B38,B39,B4,B42,B43,B44,B46,B49,B5,B50,B51,B53,B54,B56,B57,B58,B59,B60,B62,B64,B65,B66,B67,B69,B7,B71,B72,B74,B75,B77,B79,B8,B86,B88,B9,B93,B94,B96,B97,B98,C15,C17,C18,C19,C20,C22,C23,C24,C25,C30,C31,C32,C35,C36,C38,C40,C42,C44,C45,C47,C5,C52,C54,C55,C58,C63,C64,C66,C67,C68,C7,C70,C71,C73,C75,C76,C77,C80,C82,C85,C9,D10,D11,D2,D4,D6 |
Chr3:58767263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr3:58767408 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr3:58767709 |
C |
CAT |
2bp_insertion | frameshift_variant | 1 | D11 |
Chr3:58767709 |
C |
CAT |
2bp_insertion | CDS_variant | 1 | D11 |
Chr3:58767775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:58767878 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B50,B60 |
Chr3:58767878 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B50,B60 |
Chr3:58768727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,B4,C25,C5 |
Chr3:58769224 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr3:58769324 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr3:58769340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057798927.1PF00005
ABC_tran 484-633 aa
PF19055
ABC2_membrane_7 662-1066 aa
XP_057798928.1PF00005
ABC_tran 484-633 aa
PF19055
ABC2_membrane_7 662-1049 aa
XP_057798929.1PF00005
ABC_tran 316-465 aa
PF19055
ABC2_membrane_7 494-898 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798927.1 |
Pfam | PF00005 |
ABC_tran | Domain | 484 | 633 | 9.2e-24 | 85.3 | ABC transporter |
XP_057798927.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 662 | 1066 | 3.2e-207 | 689.0 | ABC-2 type transporter |
XP_057798928.1 |
Pfam | PF00005 |
ABC_tran | Domain | 484 | 633 | 8.8e-24 | 85.4 | ABC transporter |
XP_057798928.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 662 | 1049 | 1.7e-189 | 630.7 | ABC-2 type transporter |
XP_057798929.1 |
Pfam | PF00005 |
ABC_tran | Domain | 316 | 465 | 6.5e-24 | 85.8 | ABC transporter |
XP_057798929.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 494 | 898 | 2.2e-207 | 689.6 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。