Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003978`

染色体: Chr03 坐标: 58799746-58811854 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003978`
名称	SmilChr03G003978
描述	uncharacterized SmilChr03G003978
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	58799746 - 58811854 / `+`

ID 对照

NCBI Gene ID	`LOC131014835`
GeneID	`131014835`
locus_tag	`-`
NCBI Name	`LOC131014835`
原始查询	`SmilChr03G003978`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribosome 60S biosis amino-terminal protein [Source:NCBI gene (formerly Entrezgene);Acc:828809]; symbol=EMB2788; hit=AT4G27010; species=arabidopsis; confidence=medium
产物	ribosome 60S biosis amino-terminal protein [Source:NCBI gene (formerly Entrezgene);Acc:828809]; symbol=EMB2788; hit=AT4G27010; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G27010` (EMB2788) ribosome 60S biosis amino-terminal protein [Source:NCBI gene (formerly Entrezgene);Acc:828809] identity=38.3; qcov=1.03; evalue=0; confidence=medium
Rice	`Os04g0625300` - identity=37.2; qcov=0.138; evalue=7.44e-52; confidence=weak
GO	GO:0000463 (maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0000466 (maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0005730 (nucleolus)
KEGG	-
Pfam	PF11707 (Npa1); PF16201 (NopRA1)
InterPro	-
eggNOG	-
NR	GeneID:131014835

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798932.1`
2	Chromosome	染色体	0.20000	`XP_057798932.1`
3	Nucleus membrane	核膜	0.20000	`XP_057798932.1`
4	Centromere	着丝粒	0.00000	`XP_057798932.1`
5	Chromatin	染色质	0.00000	`XP_057798932.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:58799876`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr3:58799993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C70,C75,C76,C81
`Chr3:58800150`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr3:58800300`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr3:58800407`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,C87,D7
`Chr3:58800442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C70,C75
`Chr3:58800778`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr3:58801204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C70,C75,C76
`Chr3:58801533`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr3:58801743`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:58801788`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C70,C75,C76,C81
`Chr3:58802180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798932.1

2564 aa

1282

2564

Npa1

NopRA1

PF11707 Npa1 68-374 aa PF16201 NopRA1 1987-2177 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798932.1`	Pfam	`PF11707`	Npa1	Family	68	374	2.5e-46	159.2	Ribosome 60S biogenesis N-terminal
`XP_057798932.1`	Pfam	`PF16201`	NopRA1	Family	1987	2177	2e-53	181.6	Nucleolar pre-ribosomal-associated protein 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942949.1
CTAAGCCCGCCAGAACAAGGGGTTTAGGGTTTATGACAAACTGTAAACTTTAACTTTCATTTCTCTCCAAGTCTCTGTTCTTGAATTTTAGAAGTAATGGAAGAGAAAGAGCCAAAACTCTCAGAATTCGCCATCAAAATCAGCCACGAAGCAAAGCTCAAAGAGCTCCTCCGGAACTTAAACTCCATCGAATCGCAGCTCTTTACCGACGCCGCGAAAGAATTCATAAAAGTGCTCAAATCGGATGCAGGCCCTGAATT...

CDS

1 records

下载 CDS FASTA

LOC131014835
ATGGAAGAGAAAGAGCCAAAACTCTCAGAATTCGCCATCAAAATCAGCCACGAAGCAAAGCTCAAAGAGCTCCTCCGGAACTTAAACTCCATCGAATCGCAGCTCTTTACCGACGCCGCGAAAGAATTCATAAAAGTGCTCAAATCGGATGCAGGCCCTGAATTTCTGCACTCATACATTCAGACATCTTCCAAGCTCGTGGAAATATCTCAGGCGTGGGAATCTCGCAATGGAAAGCCAGGGTTTTTGCATATTTTGAA...

Protein

1 records

下载 Protein FASTA

XP_057798932.1
MEEKEPKLSEFAIKISHEAKLKELLRNLNSIESQLFTDAAKEFIKVLKSDAGPEFLHSYIQTSSKLVEISQAWESRNGKPGFLHILNLVSAILKLWKDNMGGERGGGDAGRWLDKFARSLIEEKMGDLYKELNSKEAKRQNAVLSLLASVVLRNSHLAWEVAKVFDFKLAVFPKLAEVRLRVKKPDEGRRKIHSTRKMFVRFAMSFLEVGHPRLLRGVLQQKEMYSGVLRGLGNDDEETLVYVLSVLRDRVLVPESIVPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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