Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G003988

染色体: Chr03 坐标: 58906885-58907990 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G003988
名称SmilChr03G003988
描述GCN5-related N-acetyltransferase 8-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向58906885 - 58907990 / -

ID 对照

NCBI Gene IDLOC131014844
GeneID131014844
locus_tag-
NCBI NameLOC131014844
原始查询SmilChr03G003988

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述GCN5-related N-acetyltransferase 8-like
产物GCN5-related N-acetyltransferase 8-like
ArabidopsisAT2G39020 (AT2G39020)
Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818488]
identity=55.2; qcov=1.02; evalue=1.35e-79; confidence=high
RiceOs03g0151600
-
identity=50; qcov=0.953; evalue=1.78e-62; confidence=high
GOGO:0008080 (N-acetyltransferase activity)
KEGG-
PfamPF00583 (Acetyltransf_1); PF08445 (FR47); PF13508 (Acetyltransf_7); PF13673 (Acetyltransf_10)
InterPro-
eggNOG-
NRGeneID:131014844

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057798944.1
2 Cytosol 细胞质基质 1.00000 XP_057798944.1
3 Nucleus 细胞核 0.40000 XP_057798944.1
4 Chromosome 染色体 0.00000 XP_057798944.1
5 Centromere 着丝粒 0.00000 XP_057798944.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:58907111 G GA 1bp_insertion frameshift_variant 102 A1,A11,A14,A16,A19,A23,A24,A5,A6,A7,B1,B10,B100,B106,B109,B111,B112,B113,B12,B122,B123,B125,B13,B130,B134,B135,B14,B16,B17,B21,B22,B25,B26,B31,B38,B39,B40,B41,B42,B43,B46,B5,B51,B53,B54,B55,B59,B64,B68,B69,B71,B73,B74,B75,B78,B8,B82,B86,B88,B9,B90,B92,B94,B98,B99,C13,C15,C17,C20,C27,C28,C29,C31,C32,C33,C35,C36,C4,C42,C44,C45,C47,C52,C58,C60,C63,C65,C67,C68,C70,C73,C75,C76,C78,C8,C81,C82,C86,D1,D4,D6,D9
Chr3:58907115 A AT 1bp_insertion stop_gained,frameshift_variant 4 A2,C49,D4,D5
Chr3:58907115 A AT 1bp_insertion CDS_variant 4 A2,C49,D4,D5
Chr3:58907154 C T EMS_canonical_SNV CDS_variant 1 C44
Chr3:58907220 C T EMS_canonical_SNV CDS_variant 2 A22,C44
Chr3:58907235 C T EMS_canonical_SNV CDS_variant 1 B59
Chr3:58907241 GC G 1bp_deletion frameshift_variant 1 A15
Chr3:58907241 GC G 1bp_deletion CDS_variant 1 A15
Chr3:58907244 G A EMS_canonical_SNV CDS_variant 2 A15,B59
Chr3:58907245 C T EMS_canonical_SNV CDS_variant 4 A14,B109,B24,B69
Chr3:58907253 C T EMS_canonical_SNV CDS_variant 1 C44
Chr3:58907319 C T EMS_canonical_SNV CDS_variant 1 B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057798944.1
214 aa
N
1
107
214
Acetyltransf_1
Acetyltransf_7
FR47
Acetyltransf_10
C
PF00583 Acetyltransf_1 110-190 aa PF13508 Acetyltransf_7 115-190 aa PF08445 FR47 128-192 aa PF13673 Acetyltransf_10 132-190 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057798944.1 Pfam PF00583 Acetyltransf_1 Family 110 190 2.3e-14 54.4 Acetyltransferase (GNAT) family
XP_057798944.1 Pfam PF13508 Acetyltransf_7 Domain 115 190 3.8e-09 37.5 Acetyltransferase (GNAT) domain
XP_057798944.1 Pfam PF08445 FR47 Family 128 192 3.1e-08 34.2 FR47-like protein
XP_057798944.1 Pfam PF13673 Acetyltransf_10 Domain 132 190 3.6e-06 27.7 Acetyltransferase (GNAT) domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057942961.1
GTAATTATCAATAATTAATGAAATAATATTCACAACCGCCTGTGCACAAGTTTTCATGAGTATGGAGAGAAAATCCATTAAAACAAATTGGGAAAAATGTTTTCTTTTCTTTATTTTTTTCAAAAAAGAAAACCAGAAAAAAAAAAGAGATATTGAAAGAGAAAACTATAAATACTAGTCCAACAATTTTGTACAAGCACAGCCTCAGCCGCTCATTTAAGAAAATCTATCAAAAAGCAAGTGGGCATGGCCGCCGTTAC...

CDS

1 records

下载 CDS FASTA
LOC131014844
ATGGCCGCCGTTACCCTGCCTCCCGTCCACACCTTATTCAGCCGCGTCCGACTCGCCACCGCCGCCGACATTCCCAACATACACAGACTCATCCACCAGCTGGCGGTCTACGAGCACCTCACCCACGAGTTCGAGGCCACCGCCGCCGCCCTCTCCGCCACGCTCTTCCCCGCCGCCGCCCCTCCGCCGTTTGCCTCCTTTACCACGCTCCTTCTCGAGCTCTCCACCTCGCCGTTCACGCCGTCCCATGATCCGCACTT...

Protein

1 records

下载 Protein FASTA
XP_057798944.1
MAAVTLPPVHTLFSRVRLATAADIPNIHRLIHQLAVYEHLTHEFEATAAALSATLFPAAAPPPFASFTTLLLELSTSPFTPSHDPHFTPLLTSFNLELPVDDGEEEIFRCGGGATVGGFVLFFPKYSTILAKPGFYIQNIFVRECYRRRGMGSLLLAAVAARAAEMGGRRVEWVVAEWNVDAIKFYERLGAEILPARSLCRLTGEALRAYAHRA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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