当前解析结果
SmilChr03G003988| 统一新 Gene ID | SmilChr03G003988 |
|---|---|
| 名称 | SmilChr03G003988 |
| 描述 | GCN5-related N-acetyltransferase 8-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 58906885 - 58907990 / - |
| NCBI Gene ID | LOC131014844 |
|---|---|
| GeneID | 131014844 |
| locus_tag | - |
| NCBI Name | LOC131014844 |
| 原始查询 | SmilChr03G003988 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GCN5-related N-acetyltransferase 8-like |
| 产物 | GCN5-related N-acetyltransferase 8-like |
| Arabidopsis | AT2G39020 (AT2G39020)Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818488] identity=55.2; qcov=1.02; evalue=1.35e-79; confidence=high |
| Rice | Os03g0151600- identity=50; qcov=0.953; evalue=1.78e-62; confidence=high |
| GO | GO:0008080 (N-acetyltransferase activity) |
| KEGG | - |
| Pfam | PF00583 (Acetyltransf_1); PF08445 (FR47); PF13508 (Acetyltransf_7); PF13673 (Acetyltransf_10) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014844 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057798944.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057798944.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057798944.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798944.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798944.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:58907111 |
G |
GA |
1bp_insertion | frameshift_variant | 102 | A1,A11,A14,A16,A19,A23,A24,A5,A6,A7,B1,B10,B100,B106,B109,B111,B112,B113,B12,B122,B123,B125,B13,B130,B134,B135,B14,B16,B17,B21,B22,B25,B26,B31,B38,B39,B40,B41,B42,B43,B46,B5,B51,B53,B54,B55,B59,B64,B68,B69,B71,B73,B74,B75,B78,B8,B82,B86,B88,B9,B90,B92,B94,B98,B99,C13,C15,C17,C20,C27,C28,C29,C31,C32,C33,C35,C36,C4,C42,C44,C45,C47,C52,C58,C60,C63,C65,C67,C68,C70,C73,C75,C76,C78,C8,C81,C82,C86,D1,D4,D6,D9 |
Chr3:58907115 |
A |
AT |
1bp_insertion | stop_gained,frameshift_variant | 4 | A2,C49,D4,D5 |
Chr3:58907115 |
A |
AT |
1bp_insertion | CDS_variant | 4 | A2,C49,D4,D5 |
Chr3:58907154 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:58907220 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,C44 |
Chr3:58907235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr3:58907241 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | A15 |
Chr3:58907241 |
GC |
G |
1bp_deletion | CDS_variant | 1 | A15 |
Chr3:58907244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,B59 |
Chr3:58907245 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B109,B24,B69 |
Chr3:58907253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:58907319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057798944.1PF00583
Acetyltransf_1 110-190 aa
PF13508
Acetyltransf_7 115-190 aa
PF08445
FR47 128-192 aa
PF13673
Acetyltransf_10 132-190 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798944.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 110 | 190 | 2.3e-14 | 54.4 | Acetyltransferase (GNAT) family |
XP_057798944.1 |
Pfam | PF13508 |
Acetyltransf_7 | Domain | 115 | 190 | 3.8e-09 | 37.5 | Acetyltransferase (GNAT) domain |
XP_057798944.1 |
Pfam | PF08445 |
FR47 | Family | 128 | 192 | 3.1e-08 | 34.2 | FR47-like protein |
XP_057798944.1 |
Pfam | PF13673 |
Acetyltransf_10 | Domain | 132 | 190 | 3.6e-06 | 27.7 | Acetyltransferase (GNAT) domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。