Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003991`

染色体: Chr03 坐标: 58952966-58956547 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003991`
名称	SmilChr03G003991
描述	E3 ubiquitin-protein ligase WAV3-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	58952966 - 58956547 / `+`

ID 对照

NCBI Gene ID	`LOC131014847`
GeneID	`131014847`
locus_tag	`-`
NCBI Name	`LOC131014847`
原始查询	`SmilChr03G003991`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase WAV3-like
产物	E3 ubiquitin-protein ligase WAV3-like
Arabidopsis	`AT2G38970` (AT2G38970) Zinc finger (C3HC4-type RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:818482] identity=60.9; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0806700` - identity=56.9; qcov=1.04; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF00092 (VWA); PF00097 (zf-C3HC4); PF05762 (VWA_CoxE); PF12678 (zf-rbx1); PF12861 (zf-ANAPC11); PF13519 (VWA_2); PF13639 (zf-RING_2); PF13768 (VWA_3); PF14624 (Vwaint); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131014847

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057798947.1`
2	Nucleus	细胞核	0.20000	`XP_057798947.1`
3	Cytoplasm	细胞质	0.20000	`XP_057798947.1`
4	Chromosome	染色体	0.00000	`XP_057798947.1`
5	Centromere	着丝粒	0.00000	`XP_057798947.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:58954279`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr3:58954287`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B121
`Chr3:58954298`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr3:58954342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr3:58954591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,B22
`Chr3:58954653`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr3:58954719`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr3:58955023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B119,B65
`Chr3:58955119`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B57,B6,C34,C72
`Chr3:58955179`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr3:58955251`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B28,C45,C60
`Chr3:58955275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B19,C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798947.1

721 aa

360

721

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_11

zf-C3HC4

VWA_CoxE

VWA_3

VWA

VWA_2

Vwaint

PF12678 zf-rbx1 73-124 aa PF12861 zf-ANAPC11 77-128 aa PF13639 zf-RING_2 79-124 aa PF17123 zf-RING_11 80-109 aa PF00097 zf-C3HC4 80-123 aa PF05762 VWA_CoxE 269-389 aa PF13768 VWA_3 275-444 aa PF00092 VWA 275-455 aa PF13519 VWA_2 276-382 aa PF14624 Vwaint 623-695 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798947.1`	Pfam	`PF12678`	zf-rbx1	Domain	73	124	4.3e-08	34.0	RING-H2 zinc finger domain
`XP_057798947.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	77	128	1e-05	26.2	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057798947.1`	Pfam	`PF13639`	zf-RING_2	Domain	79	124	3.1e-08	34.4	Ring finger domain
`XP_057798947.1`	Pfam	`PF17123`	zf-RING_11	Domain	80	109	6.1e-09	36.1	RING-like zinc finger
`XP_057798947.1`	Pfam	`PF00097`	zf-C3HC4	Domain	80	123	6.2e-07	29.9	Zinc finger, C3HC4 type (RING finger)
`XP_057798947.1`	Pfam	`PF05762`	VWA_CoxE	Domain	269	389	1.6e-09	38.2	VWA domain containing CoxE-like protein
`XP_057798947.1`	Pfam	`PF13768`	VWA_3	Domain	275	444	6.9e-20	72.4	von Willebrand factor type A domain
`XP_057798947.1`	Pfam	`PF00092`	VWA	Domain	275	455	1.3e-23	84.8	von Willebrand factor type A domain
`XP_057798947.1`	Pfam	`PF13519`	VWA_2	Domain	276	382	7.4e-21	75.5	von Willebrand factor type A domain
`XP_057798947.1`	Pfam	`PF14624`	Vwaint	Domain	623	695	5.7e-21	75.2	VWA / Hh protein intein-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942964.1
GTATACATTTTCTACATATATTCTTGAGACAAAAACCACAGGCAAGGTCAAAAGGCACCCCCCAGTCCCCCACCCCCCACCCCCACCCCCTCCCCCTCTCGCTCCAATCAATACAACCCACAAAGTTACAAAACAAACAGCAGAGGTCAGCTCAAGTGTCTCCATAGTTTCATTCACTTGCTGTTATTCAACCTCTCTCTCTCTCTCTCTCTACTCACTCATGGCCGCCAACAAGAAGAGTGAAGCAATTCCCCTCTTAC...

CDS

1 records

下载 CDS FASTA

LOC131014847
ATGGGGAGTAAATGGAGGAAAGTGAAGCTTGCTTTTGGGCTGAATCTGTGTGTGTACAGTCCCAGAAACCATGTGGCCGACAATGATGACGATGAGGAGTCGCCGCCGCCGTCCGAGCGGCGCTCCGACGCCGCCCTGCTTTCGCCGCCCGGTGACTGGACATCTGCTCCGCCGACTCCCTCTTCCAATAGGCTCAGGCTCTCCAAGAGTTTGAGTAGATCTTCTTCCAAGAAGACTTGCTCCATATGTTTGGCGACGAT...

Protein

1 records

下载 Protein FASTA

XP_057798947.1
MGSKWRKVKLAFGLNLCVYSPRNHVADNDDDEESPPPSERRSDAALLSPPGDWTSAPPTPSSNRLRLSKSLSRSSSKKTCSICLATMRRGDGQAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPLQGPTLEPPMGRARINPVDWHQNNDFMTVIRRLPPPRSSSARNVAPLFQAPDPAIFNDDESLDHEIDSSEKSFSNRSASGCDDDRRKVAVMTYTEVPAVAKSSTSDSFTVLLHLKAPVSNSWHNATRSD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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