Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003994`

染色体: Chr03 坐标: 58971242-58977108 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003994`
名称	SmilChr03G003994
描述	protein ENHANCED DISEASE RESISTANCE 2-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	58971242 - 58977108 / `+`

ID 对照

NCBI Gene ID	`LOC131014851`
GeneID	`131014851`
locus_tag	`-`
NCBI Name	`LOC131014851`
原始查询	`SmilChr03G003994`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein ENHANCED DISEASE RESISTANCE 2-like
产物	protein ENHANCED DISEASE RESISTANCE 2-like
Arabidopsis	`AT2G28320` (AT2G28320) Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817379] identity=61.3; qcov=1.02; evalue=0; confidence=high
Rice	`Os02g0102800` (B1370C05.34-1) - identity=34; qcov=1.04; evalue=3.47e-127; confidence=low
GO	GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00169 (PH); PF01852 (START); PF07059 (EDR2_C)
InterPro	-
eggNOG	-
NR	GeneID:131014851

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057798951.1`
2	Cytosol	细胞质基质	0.40000	`XP_057798951.1`
3	Nucleus	细胞核	0.00000	`XP_057798951.1`
4	Chromosome	染色体	0.00000	`XP_057798951.1`
5	Centromere	着丝粒	0.00000	`XP_057798951.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:58971636`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B44,C71
`Chr3:58971695`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B136,B22,C44
`Chr3:58973329`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr3:58973920`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B136,B22,C50
`Chr3:58973938`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B118,B129,B26,C24
`Chr3:58974072`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr3:58974102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C13,C44
`Chr3:58974618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr3:58974690`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:58974741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr3:58974771`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,C54
`Chr3:58974825`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,B117

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798951.1

717 aa

358

717

START

EDR2_C

PF00169 PH 9-113 aa PF01852 START 196-348 aa PF07059 EDR2_C 495-702 aa

XP_057798953.1

714 aa

357

714

START

EDR2_C

PF00169 PH 9-113 aa PF01852 START 194-345 aa PF07059 EDR2_C 492-699 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798951.1`	Pfam	`PF00169`	PH	Domain	9	113	7.5e-10	40.0	PH domain
`XP_057798951.1`	Pfam	`PF01852`	START	Domain	196	348	6.9e-18	65.5	START domain
`XP_057798951.1`	Pfam	`PF07059`	EDR2_C	Domain	495	702	2.9e-73	246.9	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057798953.1`	Pfam	`PF00169`	PH	Domain	9	113	7.4e-10	40.0	PH domain
`XP_057798953.1`	Pfam	`PF01852`	START	Domain	194	345	7e-18	65.5	START domain
`XP_057798953.1`	Pfam	`PF07059`	EDR2_C	Domain	492	699	2.9e-73	246.9	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942968.1
AACGACACACACACACACACAAAGGAAAAGAAATAAAATAAAGAAATAAGAAATGAAAAAAATTGCACATTGTAATTTAGCTAGAAATCTTGAAAAAAAGTCTGTCATCCTGCAATCGATGCTCTGGTTCCCTTTGGCGGAATCAGGGGATCATTCATCATAATTCTTTTCTCACCTTCTGAGAATTTTCTCTCTCCCTCTCTTGTACATGCACATATCTAAATCTTTCTGTATGTGTATGTATATGTGTCTATACTTGG...

XM_057942970.1
ACGACACACACACACACACAAAGGAAAAGAAATAAAATAAAGAAATAAGAAATGAAAAAAATTGCACATTGTAATTTAGCTAGAAATCTTGAAAAAAAGTCTGTCATCCTGCAATCGATGCTCTGGTTCCCTTTGGCGGAATCAGGGGATCATTCATCATAATTCTTTTCTCACCTTCTGAGAATTTTCTCTCTCCCTCTCTTGTACATGCACATATCTAAATCTTTCTGTATGTGTATGTATATGTGTCTATACTTGGT...

CDS

2 records

下载 CDS FASTA

LOC131014851
ATGGGCATGGCGGAAAATGAAGGGAAAATGCAGGGATGGCTGCACTTGATTCGTTACAATCGTATTGGGCTGCAGTATTCTCGTAAAAGATACTTCATTCTCGAAGACGACTGCCTTAAGAGCTTCAAATCAATCCCCACTTCACACACAGAGGAGCCTGTGCGAAGTGCAATAATAGACTCCTGCATTCGTGTTGTGGACAATGGAAGAGAGAGCCATCGCAGGAAATTATTTTTCATCTTCACCCTATACAATACTGC...

Protein

2 records

下载 Protein FASTA

XP_057798951.1
MGMAENEGKMQGWLHLIRYNRIGLQYSRKRYFILEDDCLKSFKSIPTSHTEEPVRSAIIDSCIRVVDNGRESHRRKLFFIFTLYNTANHNDQLKLGATSSEEAARWIRALQDAAVKTVDLVSCSKRKYQPFSLSISKRMARRSIDWTSTSLFHVDAMTSDVIAPSPWKIFGCQNAYSGLRLFKEAKDIDSNVRRWDDHPAIMAIGVINGTPEAVFRTLMAIDASRTEWDFCFNKGSVVEHLDGHTDIIHIQLYKHCLPWA...

XP_057798953.1
MGMAENEGKMQGWLHLIRYNRIGLQYSRKRYFILEDDCLKSFKSIPTSHTEEPVRSAIIDSCIRVVDNGRESHRRKLFFIFTLYNTANHNDQLKLGATSSEEAARWIRALQDAAVKTVDLVSCSKRKYQPFSLSISKRMARRSIDWTSTSLFHVDAMTSDVIAPSPWKIFGCQNGLRLFKEAKDIDSNVRRWDDHPAIMAIGVINGTPEAVFRTLMAIDASRTEWDFCFNKGSVVEHLDGHTDIIHIQLYKHCLPWAMKR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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