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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G003998

染色体: Chr03 坐标: 59023907-59030915 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G003998
名称SmilChr03G003998
描述uncharacterized SmilChr03G003998
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向59023907 - 59030915 / +

ID 对照

NCBI Gene IDLOC131014855
GeneID131014855
locus_tag-
NCBI NameLOC131014855
原始查询SmilChr03G003998

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述phosphoglucosamine mutase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831619]; symbol=AT5G17530; hit=AT5G17530; species=arabidopsis; confidence=high
产物phosphoglucosamine mutase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831619]; symbol=AT5G17530; hit=AT5G17530; species=arabidopsis; confidence=high
ArabidopsisAT5G17530 (AT5G17530)
phosphoglucosamine mutase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831619]
identity=77.9; qcov=0.998; evalue=0; confidence=high
RiceOs07g0447800 (P0475E07.126)
-
identity=77.7; qcov=0.998; evalue=0; confidence=high
GOGO:0004615 (phosphomannomutase activity); GO:0005975 (carbohydrate metabolic process); GO:0009570 (chloroplast stroma)
KEGG-
PfamPF02878 (PGM_PMM_I); PF02879 (PGM_PMM_II); PF02880 (PGM_PMM_III)
InterPro-
eggNOG-
NRGeneID:131014855

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057798958.1
2 Cytosol 细胞质基质 1.00000 XP_057798962.1
3 Chloroplast stroma 叶绿体基质 1.00000 XP_057798958.1
4 Cytoplasm 细胞质 0.80000 XP_057798962.1
5 Nucleus 细胞核 0.00000 XP_057798958.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:59024933 G A EMS_canonical_SNV CDS_variant 1 B22
Chr3:59026027 G A EMS_canonical_SNV CDS_variant 3 B71,C62,D6
Chr3:59026147 G A EMS_canonical_SNV CDS_variant 5 B113,B129,B52,C24,C61
Chr3:59028499 C T EMS_canonical_SNV CDS_variant 1 C53
Chr3:59028518 G A EMS_canonical_SNV CDS_variant 1 C44
Chr3:59029525 C T EMS_canonical_SNV CDS_variant 2 B35,C82
Chr3:59029637 G A EMS_canonical_SNV CDS_variant 1 C48
Chr3:59029639 C T EMS_canonical_SNV CDS_variant 4 B123,B14,B69,C28
Chr3:59029796 C T EMS_canonical_SNV CDS_variant 2 B111,B99
Chr3:59030477 C T EMS_canonical_SNV CDS_variant 1 C47
Chr3:59030500 G A EMS_canonical_SNV CDS_variant 2 B91,C53
Chr3:59030530 C CT 1bp_insertion frameshift_variant 5 B111,B65,B78,C50,C54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798958.1
617 aa
N
1
308
617
PGM_PMM_I
PGM_PMM_II
PGM_PMM_III
C
PF02878 PGM_PMM_I 96-237 aa PF02879 PGM_PMM_II 286-373 aa PF02880 PGM_PMM_III 379-481 aa
XP_057798959.1
615 aa
N
1
308
615
PGM_PMM_I
PGM_PMM_II
PGM_PMM_III
C
PF02878 PGM_PMM_I 94-235 aa PF02879 PGM_PMM_II 284-371 aa PF02880 PGM_PMM_III 377-479 aa
XP_057798960.1
615 aa
N
1
308
615
PGM_PMM_I
PGM_PMM_II
PGM_PMM_III
C
PF02878 PGM_PMM_I 96-237 aa PF02879 PGM_PMM_II 286-373 aa PF02880 PGM_PMM_III 379-481 aa
XP_057798961.1
613 aa
N
1
306
613
PGM_PMM_I
PGM_PMM_II
PGM_PMM_III
C
PF02878 PGM_PMM_I 94-235 aa PF02879 PGM_PMM_II 284-371 aa PF02880 PGM_PMM_III 377-479 aa
XP_057798962.1
545 aa
N
1
272
545
PGM_PMM_I
PGM_PMM_II
PGM_PMM_III
C
PF02878 PGM_PMM_I 24-165 aa PF02879 PGM_PMM_II 214-301 aa PF02880 PGM_PMM_III 307-409 aa
XP_057798963.1
543 aa
N
1
272
543
PGM_PMM_I
PGM_PMM_II
PGM_PMM_III
C
PF02878 PGM_PMM_I 24-165 aa PF02879 PGM_PMM_II 214-301 aa PF02880 PGM_PMM_III 307-409 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057798958.1 Pfam PF02878 PGM_PMM_I Domain 96 237 7.7e-24 84.7 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
XP_057798958.1 Pfam PF02879 PGM_PMM_II Domain 286 373 6.5e-20 72.2 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
XP_057798958.1 Pfam PF02880 PGM_PMM_III Domain 379 481 8.5e-10 39.5 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
XP_057798959.1 Pfam PF02878 PGM_PMM_I Domain 94 235 7.7e-24 84.7 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
XP_057798959.1 Pfam PF02879 PGM_PMM_II Domain 284 371 6.5e-20 72.2 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
XP_057798959.1 Pfam PF02880 PGM_PMM_III Domain 377 479 8.5e-10 39.5 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
XP_057798960.1 Pfam PF02878 PGM_PMM_I Domain 96 237 8e-24 84.6 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
XP_057798960.1 Pfam PF02879 PGM_PMM_II Domain 286 373 6.5e-20 72.2 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
XP_057798960.1 Pfam PF02880 PGM_PMM_III Domain 379 481 8.6e-10 39.5 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
XP_057798961.1 Pfam PF02878 PGM_PMM_I Domain 94 235 7.9e-24 84.6 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
XP_057798961.1 Pfam PF02879 PGM_PMM_II Domain 284 371 6.5e-20 72.2 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
XP_057798961.1 Pfam PF02880 PGM_PMM_III Domain 377 479 8.6e-10 39.5 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
XP_057798962.1 Pfam PF02878 PGM_PMM_I Domain 24 165 6.1e-24 85.0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
XP_057798962.1 Pfam PF02879 PGM_PMM_II Domain 214 301 5.5e-20 72.4 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
XP_057798962.1 Pfam PF02880 PGM_PMM_III Domain 307 409 7.1e-10 39.7 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
XP_057798963.1 Pfam PF02878 PGM_PMM_I Domain 24 165 6.3e-24 84.9 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
XP_057798963.1 Pfam PF02879 PGM_PMM_II Domain 214 301 5.5e-20 72.4 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
XP_057798963.1 Pfam PF02880 PGM_PMM_III Domain 307 409 7.2e-10 39.7 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057942978.1
TAAAGTCGTGTTCCTACAATCTCAATAAATCGCATTCCTAGAAAGACGGCAGCTGTCGCGATCTCCAGCTTCGCCACCTAATCAGCATATTCGGTGCAGTCTTCCATAGTTTTCTTCGCCAACCTCTACCGCTTCTTCTCTCAATTCAACTGTTTTGCCTTTCAAATATGGCAGCAATGTCAGGGAAGATTGTCCAACATGTTCTGGTAGCACATTGCTGCCAGCAGGATAGGCAGTTAAGCACCCAATACCGAAAGGAT...
XM_057942979.1
TAAAGTCGTGTTCCTACAATCTCAATAAATCGCATTCCTAGAAAGACGGCAGCTGTCGCGATCTCCAGCTTCGCCACCTAATCAGCATATTCGGTGCAGTCTTCCATAGTTTTCTTCGCCAACCTCTACCGCTTCTTCTCTCAATTCAACTGTTTTGCCTTTCAAATATGGCAGCGGCCTCATCTTCCACCATTATACCTTCTGTTGACAAAATTGCATTTCTCAAGCTTCAAAATGGCAGTGATATTCGAGGTGTTGCT...

CDS

6 records

下载 CDS FASTA
LOC131014855
ATGGCAGCAATGTCAGGGAAGATTGTCCAACATGTTCTGGTAGCACATTGCTGCCAGCAGGATAGGCAGTTAAGCACCCAATACCGAAAGGATTGTTGTACCCCTTATAGAAAAAACTTGCTTCCCTACCTAAGTGGAAAGCTGGCGTGGAATGACATCTCCACCAAGCAATTGTCCACATTCTCAAATTTAAACCGAGCAATTGTTTACTGCAATGCGGCCTCATCTTCCACCATTATACCTTCTGTTGACAAAATTGC...
LOC131014855
ATGGCAGCGGCCTCATCTTCCACCATTATACCTTCTGTTGACAAAATTGCATTTCTCAAGCTTCAAAATGGCAGTGATATTCGAGGTGTTGCTGTGGATGGTGTTGAGGGTGAACCTGTTAGCCTCACAGAACCAGTTACAGAAGCAATTGCAGCTGCTTTTGCAGCATGGTTGTTGGATAGAAAGAAACCAGATTCATCTACACGGTTGAAAGTCTCTATAGGGAATGATTCACGAATATCTGCACAGAAGTTGCAGGA...

Protein

6 records

下载 Protein FASTA
XP_057798958.1
MLHAAMSGKIVQHVLVAHCCQQDRQLSTQYRKDCCTPYRKNLLPYLSGKLAWNDISTKQLSTFSNLNRAIVYCNAASSSTIIPSVDKIAFLKLQNGSDIRGVAVDGVEGEPVSLTEPVTEAIAAAFAAWLLDRKKPDSSTRLKVSIGNDSRISAQKLQDAVSRGLAGGGVDVIQYGLASTPAMFNSTLTKNEDFLCPVDGSIMITASHLPYNRNGFKFFTNAGGLGKVDIKDILERAADIYKNFTDESLREAEKRAAQSV...
XP_057798959.1
MAAMSGKIVQHVLVAHCCQQDRQLSTQYRKDCCTPYRKNLLPYLSGKLAWNDISTKQLSTFSNLNRAIVYCNAASSSTIIPSVDKIAFLKLQNGSDIRGVAVDGVEGEPVSLTEPVTEAIAAAFAAWLLDRKKPDSSTRLKVSIGNDSRISAQKLQDAVSRGLAGGGVDVIQYGLASTPAMFNSTLTKNEDFLCPVDGSIMITASHLPYNRNGFKFFTNAGGLGKVDIKDILERAADIYKNFTDESLREAEKRAAQSVKR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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