Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003999`

染色体: Chr03 坐标: 59031020-59034130 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003999`
名称	SmilChr03G003999
描述	GCN5-related N-acetyltransferase 4, chloroplastic-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	59031020 - 59034130 / `-`

ID 对照

NCBI Gene ID	`LOC131014857`
GeneID	`131014857`
locus_tag	`-`
NCBI Name	`LOC131014857`
原始查询	`SmilChr03G003999`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GCN5-related N-acetyltransferase 4, chloroplastic-like
产物	GCN5-related N-acetyltransferase 4%2C chloroplastic-like
Arabidopsis	`AT2G39000` (AT2G39000) Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818486] identity=67.1; qcov=0.879; evalue=4.09e-124; confidence=high
Rice	`Os02g0806000` (OJ1548_F12.27-1) - identity=60.8; qcov=0.8; evalue=1.42e-100; confidence=high
GO	GO:0006474 (N-terminal protein amino acid acetylation); GO:0008080 (N-acetyltransferase activity); GO:0009507 (chloroplast)
KEGG	-
Pfam	PF00583 (Acetyltransf_1); PF13508 (Acetyltransf_7); PF13673 (Acetyltransf_10)
InterPro	-
eggNOG	-
NR	GeneID:131014857

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057798964.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057798964.1`
3	Nucleus	细胞核	0.00000	`XP_057798964.1`
4	Chromosome	染色体	0.00000	`XP_057798964.1`
5	Centromere	着丝粒	0.00000	`XP_057798964.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:59031295`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B118,B35,C82
`Chr3:59031306`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B123,B14,B69,B70,C28
`Chr3:59031347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr3:59031355`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr3:59031375`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B23,B7,C1
`Chr3:59031376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,C82
`Chr3:59031757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B111,B65,B78,C50,C54
`Chr3:59031921`	`CTG`	`C`	2bp_deletion	frameshift_variant	1	D9
`Chr3:59031921`	`CTG`	`C`	2bp_deletion	CDS_variant	1	D9
`Chr3:59031953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,B40
`Chr3:59033725`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C48
`Chr3:59033725`	`GA`	`G`	1bp_deletion	CDS_variant	1	C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798964.1

290 aa

145

290

Acetyltransf_1

Acetyltransf_7

Acetyltransf_10

PF00583 Acetyltransf_1 173-239 aa PF13508 Acetyltransf_7 177-240 aa PF13673 Acetyltransf_10 181-245 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798964.1`	Pfam	`PF00583`	Acetyltransf_1	Family	173	239	3.1e-15	57.2	Acetyltransferase (GNAT) family
`XP_057798964.1`	Pfam	`PF13508`	Acetyltransf_7	Domain	177	240	3.3e-09	37.7	Acetyltransferase (GNAT) domain
`XP_057798964.1`	Pfam	`PF13673`	Acetyltransf_10	Domain	181	245	5.3e-07	30.4	Acetyltransferase (GNAT) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942981.1
ACGTCAGATTCAAACTTACGTGAGCTCATTCTCAGTTGTCTGTTTGCTCGTCTTTCCTTTCATTTCTTTAACTACAAAAACAGACTTCACCAAAAATCTGTTTACAACCTACCCTATTTCCCATGGTTTCGTAAGAGAAAGAGAGAGAGAGCATCTTAGATCCCTGAAATTTTGGGAGTCCTAGAAGTAAGAAAAGGTAGAATTTTTTATACCTTTTCTTCTCTCTGCATCCTTGTCTCCATCTCCATCTAGTGAGAGAG...

CDS

1 records

下载 CDS FASTA

LOC131014857
ATGCAGACGATTTGTTTAGGAGGGGGCATCCTTAATCTCAGTGCCACTGCCCAAATCAAGAATCTCAAGCATCAACCTTTTTCTTGTATTCCCAATTTGTCTCATTGCCAGATTCCCAAATCTGGATTCTCTTCTCCACCTCAGCTCTTATCAGGTTCTTGTAGAGCCAGTCAAGTGGCTGAATTATTCCCCACAGTCTCTCCCGAGATCCTCGTTCGTGAGGCGAGGATAGAGGACTGCTGGGAAGTCGCTGAGACGCA...

Protein

1 records

下载 Protein FASTA

XP_057798964.1
MQTICLGGGILNLSATAQIKNLKHQPFSCIPNLSHCQIPKSGFSSPPQLLSGSCRASQVAELFPTVSPEILVREARIEDCWEVAETHCSSFFPEFIFPLDFVMRIDRLIAMLFGFSLPKGCRRTCLVAVTGTSFLGSDDLRIASFDGKLSLSKGYVAGILTVDTVADFLPRKGPHRQRRTGIAYISNVAVRERFRRKGIAKTLVAKAEAKAKSWGCRAIALHSDLNNPGATKLYTSRGFRCIDVPAGANWPEPRTSPEMQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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