Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004001`

染色体: Chr03 坐标: 59038436-59043053 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004001`
名称	SmilChr03G004001
描述	double-stranded RNA-binding protein 2-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	59038436 - 59043053 / `-`

ID 对照

NCBI Gene ID	`LOC131014858`
GeneID	`131014858`
locus_tag	`-`
NCBI Name	`LOC131014858`
原始查询	`SmilChr03G004001`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	double-stranded RNA-binding protein 2-like
产物	double-stranded RNA-binding protein 2-like
Arabidopsis	`AT2G28380` (DRB2) dsRNA-binding protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:817386] identity=57.2; qcov=0.836; evalue=2.04e-125; confidence=high
Rice	`Os10g0480500` (OsDRB2) - identity=59.4; qcov=0.766; evalue=2.92e-117; confidence=high
GO	GO:0003725 (double-stranded RNA binding)
KEGG	-
Pfam	PF00035 (dsrm)
InterPro	-
eggNOG	-
NR	GeneID:131014858

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057798966.1`
2	Nucleus	细胞核	0.60000	`XP_057798966.1`
3	Cytosol	细胞质基质	0.60000	`XP_057798966.1`
4	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057798966.1`
5	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.40000	`XP_057798966.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:59038898`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B57,C72
`Chr3:59038928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A22,B139,C44,C63,C67
`Chr3:59039025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr3:59039214`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:59039235`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,C43
`Chr3:59039323`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:59039529`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr3:59039576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,C44,C63,C67
`Chr3:59039646`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B123,B14,B70,C28
`Chr3:59039663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr3:59040300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B93,C31,D3
`Chr3:59040372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,B118,B97,C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798966.1

470 aa

235

470

dsrm

PF00035 dsrm 2-68 aa PF00035 dsrm 88-153 aa

XP_057798967.1

470 aa

235

470

dsrm

PF00035 dsrm 2-68 aa PF00035 dsrm 88-153 aa

XP_057798968.1

470 aa

235

470

dsrm

PF00035 dsrm 2-68 aa PF00035 dsrm 88-153 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798966.1`	Pfam	`PF00035`	dsrm	Domain	2	68	1.3e-30	106.5	Double-stranded RNA binding motif
`XP_057798966.1`	Pfam	`PF00035`	dsrm	Domain	88	153	1.3e-30	106.5	Double-stranded RNA binding motif
`XP_057798967.1`	Pfam	`PF00035`	dsrm	Domain	2	68	1.3e-30	106.5	Double-stranded RNA binding motif
`XP_057798967.1`	Pfam	`PF00035`	dsrm	Domain	88	153	1.3e-30	106.5	Double-stranded RNA binding motif
`XP_057798968.1`	Pfam	`PF00035`	dsrm	Domain	2	68	1.3e-30	106.5	Double-stranded RNA binding motif
`XP_057798968.1`	Pfam	`PF00035`	dsrm	Domain	88	153	1.3e-30	106.5	Double-stranded RNA binding motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942985.1
TATCTAACCGTGCAACTGATTGCATCCTAAGATTCCCACCACTCTCTCTCTCTCATACGTTGTTTTTAAAGCCAAACTATTACTGCACAGCAAAAATGCAAAACAAAAGTCATCCCTCTCTCTTTCTAAAGCCTTTCTCTCTCTAGAAAGCTCACCGAAAAACTCAGCCTATCTTTTGAGAAATGCAAGCAAAAACCCTAGTGAAAAACCAGCAAAAACTCAGGAAAAGACTCTCTGATCTCAATTGGAGCCTCGATTGA...

XM_057942984.1
CTGCACAGCAAAAATGCAAAACAAAAGTCATCCCTCTCTCTTTCTAAAGCCTTTCTCTCTCTAGAAAGCTCACCGAAAAACTCAGCCTATCTTTTGAGAAATGCAAGCAAAAACCCTAGTGAAAAACCAGCAAAAACTCAGGAAAAGACTCTCTGATCTCAATTGGAGCCTCGATTGAGACGATGATCTGATGCATTTCGCTAATAGAGAAGAGAGATAAGATGTATAAGAACCAGCTGCAGGAGCTGGCGCAACGGAGC...

CDS

3 records

下载 CDS FASTA

LOC131014858
ATGTATAAGAACCAGCTGCAGGAGCTGGCGCAACGGAGCTGCTTCAATCTGCCGGCGTACACGTGCATCAGGGAAGGTCCCGATCACGCGCCGCGCTTCAAGGCCGCCGTTAATTTTAACGGTGAGACGTTTGAGAGCCCTAGCTACTGCTCCACGCTCCGCCAGGCGGAACACTCCGCCGCTGAGGTGGCGCTCAATGCTCTCGCCAGCCGCGGCCCTTCTAACTCGCTCGCTGCCCGAATTCTGGATGAGACAGGTGT...

Protein

3 records

下载 Protein FASTA

XP_057798966.1
MYKNQLQELAQRSCFNLPAYTCIREGPDHAPRFKAAVNFNGETFESPSYCSTLRQAEHSAAEVALNALASRGPSNSLAARILDETGVYKNLLQEVSQRVGASLPAYSTFRTGLGHLPIFTCTVELAGVIFTGVPAKNKKQAEKNAAMAAWLSLKSLVQRTELPYERSHKDEQEHVTVARALQKYLIKARLARLSFPIKFPTLNPRPSSTQPSPTTTSKILPLICPKTAQRNRPNPAVNNNPTLQKNIRTTSQPMVTVPNE...

XP_057798967.1
MYKNQLQELAQRSCFNLPAYTCIREGPDHAPRFKAAVNFNGETFESPSYCSTLRQAEHSAAEVALNALASRGPSNSLAARILDETGVYKNLLQEVSQRVGASLPAYSTFRTGLGHLPIFTCTVELAGVIFTGVPAKNKKQAEKNAAMAAWLSLKSLVQRTELPYERSHKDEQEHVTVARALQKYLIKARLARLSFPIKFPTLNPRPSSTQPSPTTTSKILPLICPKTAQRNRPNPAVNNNPTLQKNIRTTSQPMVTVPNE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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