Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr03G004008`

Chromosome: Chr03 Coordinates: 59087123-59088281 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr03G004008`
Name	SmilChr03G004008
Description	uncharacterized SmilChr03G004008
Chromosome / SeqID	Chr03 / NC_080389.1
Coordinates and Strand	59087123 - 59088281 / `+`

ID Mapping

NCBI Gene ID	`LOC131019073`
GeneID	`131019073`
locus_tag	`-`
NCBI Name	`LOC131019073`
Original query	`SmilChr03G004008`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
Description	hit=Os06g0523701; species=rice; confidence=weak
Product	hit=Os06g0523701; species=rice; confidence=weak
Arabidopsis	`-` -
Rice	`Os06g0523701` - identity=43.8; qcov=0.241; evalue=1.86e-16; confidence=weak
GO	GO:0003676 (nucleic acid binding)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131019073

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803737.1`
2	Cytoplasm	细胞质	0.40000	`XP_057803737.1`
3	Chromosome	染色体	0.00000	`XP_057803737.1`
4	Centromere	着丝粒	0.00000	`XP_057803737.1`
5	Chromatin	染色质	0.00000	`XP_057803737.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr3:59087133`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,A18,D2
`Chr3:59087155`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	B4,B8,C55,C77
`Chr3:59087155`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B4,B8,C55,C77
`Chr3:59087205`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr3:59087213`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,C31,C34,C67
`Chr3:59087217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:59087224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr3:59087229`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B28,B58,D10
`Chr3:59087241`	`TA`	`T`	1bp_deletion	frameshift_variant	17	A20,A23,A4,A6,B126,B137,B15,B24,B4,B5,B67,C12,C15,C19,C31,C58,C6
`Chr3:59087248`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr3:59087258`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr3:59087314`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B33,B54,B91,C29

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Predicted Protein Domains

This gene has no available Pfam domain hit in the current release.

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cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057947754.1
ATGTACAACACTATCCATATCGATGAAAAGTGGTTCTACATCACCAAGGCTTCTCACAGATTCTATTTAACTCCAGCAGAGGCTGAGCCACATAGAAGTTGCAAGAGTAAAAAGTTCATAAAAAAGGTGATGTTCGTGTGTGCGGTGTGTCGACCAATATTTGGTGATGATGGGAGTGTTCTTTTTGACGGGAAGATAGGAATCTTCCCTTTAACAGAAATGGTACCAGCAAAGAGGTCAAGCAAGAATAGAGCAGCAGG...

CDS

1 records

Download CDS FASTA

LOC131019073
ATGTACAACACTATCCATATCGATGAAAAGTGGTTCTACATCACCAAGGCTTCTCACAGATTCTATTTAACTCCAGCAGAGGCTGAGCCACATAGAAGTTGCAAGAGTAAAAAGTTCATAAAAAAGGTGATGTTCGTGTGTGCGGTGTGTCGACCAATATTTGGTGATGATGGGAGTGTTCTTTTTGACGGGAAGATAGGAATCTTCCCTTTAACAGAAATGGTACCAGCAAAGAGGTCAAGCAAGAATAGAGCAGCAGG...

Protein

1 records

Download Protein FASTA

XP_057803737.1
MYNTIHIDEKWFYITKASHRFYLTPAEAEPHRSCKSKKFIKKVMFVCAVCRPIFGDDGSVLFDGKIGIFPLTEMVPAKRSSKNRAAGTLEQKPIESITQQVMRECFIKQLVPAIKAKWPSFASKIIFIQQDNARPHIKNEDREFRDCATADGFDINIIHQPPNSPDNNINDLGWFRAIQSLQTESVYFDVDSLVNAVVSSFNELAPMTLNKVFLSLQGCMIEIMKVKGQNCYKLPHMKKDALLRQQLLPQCLEVPTDLVK...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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