Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004021`

染色体: Chr03 坐标: 59189135-59192312 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004021`
名称	SmilChr03G004021
描述	rhomboid-like protein 19
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	59189135 - 59192312 / `-`

ID 对照

NCBI Gene ID	`LOC131014933`
GeneID	`131014933`
locus_tag	`-`
NCBI Name	`LOC131014933`
原始查询	`SmilChr03G004021`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rhomboid-like protein 19
产物	rhomboid-like protein 19
Arabidopsis	`AT3G07950` (AT3G07950) rhomboid protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819986] identity=65; qcov=0.982; evalue=1.08e-101; confidence=high
Rice	`Os07g0655400` (OsRhmbd13) - identity=59.6; qcov=0.986; evalue=5.58e-76; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0006890 (retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum); GO:0016020 (membrane)
KEGG	-
Pfam	PF01694 (Rhomboid); PF08551 (DUF1751)
InterPro	-
eggNOG	-
NR	GeneID:131014933

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057799097.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057799097.1`
3	Golgi apparatus	高尔基体	0.40000	`XP_057799096.1`
4	Nucleus	细胞核	0.00000	`XP_057799096.1`
5	Chromosome	染色体	0.00000	`XP_057799096.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:59189297`	`CTT`	`C`	2bp_deletion	frameshift_variant	1	A21
`Chr3:59189297`	`CTT`	`C`	2bp_deletion	CDS_variant	1	A21
`Chr3:59189334`	`C`	`CA`	1bp_insertion	frameshift_variant	5	A14,A4,B129,B13,B87
`Chr3:59189334`	`C`	`CA`	1bp_insertion	CDS_variant	5	A14,A4,B129,B13,B87
`Chr3:59189861`	`CG`	`C`	1bp_deletion	frameshift_variant	2	A13,C54
`Chr3:59189861`	`CG`	`C`	1bp_deletion	CDS_variant	2	A13,C54
`Chr3:59189878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr3:59189889`	`G`	`GT`	1bp_insertion	frameshift_variant	12	A10,A21,A8,B110,B4,B49,B79,C25,C5,C58,C76,C85
`Chr3:59189921`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B121
`Chr3:59190099`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr3:59190173`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B2,B41,B86,B99
`Chr3:59190192`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,C60,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799096.1

294 aa

147

294

DUF1751

Rhomboid

PF08551 DUF1751 14-279 aa PF01694 Rhomboid 46-190 aa

XP_057799097.1

221 aa

110

221

DUF1751

PF08551 DUF1751 1-206 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799096.1`	Pfam	`PF08551`	DUF1751	Domain	14	279	5.1e-71	240.0	Eukaryotic integral membrane protein (DUF1751)
`XP_057799096.1`	Pfam	`PF01694`	Rhomboid	Domain	46	190	6.3e-05	23.9	Rhomboid domain
`XP_057799097.1`	Pfam	`PF08551`	DUF1751	Domain	1	206	1e-54	186.5	Eukaryotic integral membrane protein (DUF1751)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943113.1
GAAATTCATGTGAACACAATGAGGTGAAATAGGAATTCCGAAATCTAAATTCGGAAAACCACTTCTCCTTCCTTTCTCAGCATGGTTCATCGATTTCTTGCTTCAGAATTAAGAATTCCACACTAATAGAAAACATTCCAAATTCAGATCACTAATTCATAGCATCAAAAAATATACCTAAAATATATCATCAATAGACCTTCAAAAAATTTCTTTCACATCGAACCACAATTCGAAAATCAACCAGTTTTGAAACCCAA...

XM_057943114.1
TTCATGTGAACACAATGAGGTGAAATAGGAATTCCGAAATCTAAATTCGGAAAACCACTTCTCCTTCCTTTCTCAGCATGGTTCATCGATTTCTTGCTTCAGAATTAAGAATTCCACACTAATAGAAAACATTCCAAATTCAGATCACTAATTCATAGCATCAAAAAATATACCTAAAATATATCATCAATAGACCTTCAAAAAATTTCTTTCACATCGAACCACAATTCGAAAATCAACCAGTTTTGAAACCCAAATTG...

CDS

2 records

下载 CDS FASTA

LOC131014933
ATGAACATGAACGCAGGATTCACGAAGCTGTGCAAGGGGCTGGCAGTGGTATTAATAGGCGGCCACTTTGTTGTGCAGATTCCCACTGCTGTTTCTTATCTTACTCTCATCCCTGCCAAGACAATTCCTTTTGGTTGGAATCTCATTACAGCTGGATTTGTTGAACAAACAATCTACGGGGTGGTGATCAGTATAGTTGGTCTTCTTTTTGTTGGGAGGATGCTTGAACCCATATGGGGGTCTAGGGAATTTTTGAAGTT...

LOC131014933
ATGCTTGAACCCATATGGGGGTCTAGGGAATTTTTGAAGTTCATCTTTGTAGTTGACCTCCTAACATCATTTTGCATTTTCACTGCTGCTATTTCCATGTACTACTTTACGAGGGAGGAAATATACCTTTACAAACCTATTTCAGGATTCCAAGGGATCCTATCGGGGCTTTTAGTTGGCATCAAACAAATAATACCTGATCAAGAGTTGTCTTTCTTAAAGATAAAAGCAAAATGGCTTCCGACCTTGGTAATCTTGGT...

Protein

2 records

下载 Protein FASTA

XP_057799096.1
MNMNAGFTKLCKGLAVVLIGGHFVVQIPTAVSYLTLIPAKTIPFGWNLITAGFVEQTIYGVVISIVGLLFVGRMLEPIWGSREFLKFIFVVDLLTSFCIFTAAISMYYFTREEIYLYKPISGFQGILSGLLVGIKQIIPDQELSFLKIKAKWLPTLVILVSVAVSFLVTETAAYLPILICGTYMGWIYLRYWQRKPETNLKGDPSDEFAFSTFFPEILRSLIDPIATIFERMLCGRRPEPPQVTKDYNFVDTSLPSPESL...

XP_057799097.1
MLEPIWGSREFLKFIFVVDLLTSFCIFTAAISMYYFTREEIYLYKPISGFQGILSGLLVGIKQIIPDQELSFLKIKAKWLPTLVILVSVAVSFLVTETAAYLPILICGTYMGWIYLRYWQRKPETNLKGDPSDEFAFSTFFPEILRSLIDPIATIFERMLCGRRPEPPQVTKDYNFVDTSLPSPESLEASRRRERGARALEERLAAERLKAEQTKRELGNV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器