Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004022`

染色体: Chr03 坐标: 59192461-59197626 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004022`
名称	SmilChr03G004022
描述	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	59192461 - 59197626 / `+`

ID 对照

NCBI Gene ID	`LOC131014913`
GeneID	`131014913`
locus_tag	`-`
NCBI Name	`LOC131014913`
原始查询	`SmilChr03G004022`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial-like
产物	3-oxoacyl-[acyl-carrier-protein] synthase%2C mitochondrial-like
Arabidopsis	`AT2G04540` (AT2G04540) Beta-ketoacyl synthase [Source:NCBI gene (formerly Entrezgene);Acc:814996] identity=72.4; qcov=0.998; evalue=0; confidence=high
Rice	`Os02g0196900` - identity=77.5; qcov=0.503; evalue=9.1e-131; confidence=medium
GO	GO:0004315 (3-oxoacyl-[acyl-carrier-protein] synthase activity); GO:0006633 (fatty acid biosynthetic process)
KEGG	smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00780 (Biotin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00109 (ketoacyl-synt); PF02801 (Ketoacyl-synt_C)
InterPro	-
eggNOG	-
NR	GeneID:131014913

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057799057.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057799057.1`
3	Nucleus	细胞核	0.00000	`XP_057799057.1`
4	Chromosome	染色体	0.00000	`XP_057799057.1`
5	Centromere	着丝粒	0.00000	`XP_057799057.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:59193536`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B19,C57,C60
`Chr3:59193597`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B98,C48
`Chr3:59194114`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr3:59194418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,B66
`Chr3:59195509`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B19,C57,C60
`Chr3:59196480`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr3:59196855`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,B66
`Chr3:59197311`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr3:59197327`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,A3,D2,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799057.1

469 aa

234

469

ketoacyl-synt

Ketoacyl-synt_C

PF00109 ketoacyl-synt 36-300 aa PF02801 Ketoacyl-synt_C 308-424 aa

XP_057799058.1

469 aa

234

469

ketoacyl-synt

Ketoacyl-synt_C

PF00109 ketoacyl-synt 36-300 aa PF02801 Ketoacyl-synt_C 308-424 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799057.1`	Pfam	`PF00109`	ketoacyl-synt	Domain	36	300	2e-54	185.6	Beta-ketoacyl synthase, N-terminal domain
`XP_057799057.1`	Pfam	`PF02801`	Ketoacyl-synt_C	Domain	308	424	2.9e-37	128.0	Beta-ketoacyl synthase, C-terminal domain
`XP_057799058.1`	Pfam	`PF00109`	ketoacyl-synt	Domain	36	300	2e-54	185.6	Beta-ketoacyl synthase, N-terminal domain
`XP_057799058.1`	Pfam	`PF02801`	Ketoacyl-synt_C	Domain	308	424	2.9e-37	128.0	Beta-ketoacyl synthase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943074.1
ACTTGAGGCGGGCTATGGCTGAATAGGTAACAATCTCACTCTTAAATAAAAAAAAAATAAGAAAAAATCTCCATTTGCATATAAAAGAATAGGCGTCACTGCAAGTTGAATAAGTTGGATTTCGAGAAAATATTTGGAAGCAGCAATGGCAATGGCTAAGCGCAATAAGAGAATCTTGACATCAATCATTCACGTCAGCCGTTTGTTCTCTACTGTTCCCTTTGACCCTCCACCCCTTTCAGCGCCCCATCGAGTTGTTG...

XM_057943075.1
AATGCATTTTTCACATTATAAAACATATTACTAATTTCGAGTATAAAAATGTCTCTTTTTCGGAAGGAGAAAGATGCGGTGAATTTAAGTTAGCATATTACCTGTTTGATAGAATTTCCCAAAGAGATGAAGCATACAATTCTGGGATATTAGACGATTTTGCGACGTAATTCGCAATGTGTTTGTCATTGATAACTTTTTTTCTTCCATGAAGGCGTCACTGCAAGTTGAATAAGTTGGATTTCGAGAAAATATTTGGA...

CDS

2 records

下载 CDS FASTA

LOC131014913
ATGGCAATGGCTAAGCGCAATAAGAGAATCTTGACATCAATCATTCACGTCAGCCGTTTGTTCTCTACTGTTCCCTTTGACCCTCCACCCCTTTCAGCGCCCCATCGAGTTGTTGTGACAGGTTTAGGTATGGTAACTCCTTTGGGCTGTGGTGTGGAAACCACCTGGAAGCGTTTAATGGATGGGGATTGCGGAATTAGGGCAGTAACTATTGAAGATCTGAAGATGAATGGATTTGATACGGAGACACAGCAGCAAAC...

Protein

2 records

下载 Protein FASTA

XP_057799057.1
MAMAKRNKRILTSIIHVSRLFSTVPFDPPPLSAPHRVVVTGLGMVTPLGCGVETTWKRLMDGDCGIRAVTIEDLKMNGFDTETQQQTFDHLTSKVAGVVRCGSNPGEFNEELWLNSKDHRSIARFIGYALCAADEALRDANYIPTQQDEKESTGVSIGAGTGSISDILDASRMICEKKLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTEASIDALSIAGFCRSRA...

XP_057799058.1
MAMAKRNKRILTSIIHVSRLFSTVPFDPPPLSAPHRVVVTGLGMVTPLGCGVETTWKRLMDGDCGIRAVTIEDLKMNGFDTETQQQTFDHLTSKVAGVVRCGSNPGEFNEELWLNSKDHRSIARFIGYALCAADEALRDANYIPTQQDEKESTGVSIGAGTGSISDILDASRMICEKKLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTEASIDALSIAGFCRSRA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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