Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004027`

染色体: Chr03 坐标: 59268266-59273392 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004027`
名称	SmilChr03G004027
描述	patatin-like protein 6
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	59268266 - 59273392 / `-`

ID 对照

NCBI Gene ID	`LOC131014911`
GeneID	`131014911`
locus_tag	`-`
NCBI Name	`LOC131014911`
原始查询	`SmilChr03G004027`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	patatin-like protein 6
产物	patatin-like protein 6
Arabidopsis	`AT2G39220` (PLP6) PATATIN-like protein 6 [Source:NCBI gene (formerly Entrezgene);Acc:818507] identity=65; qcov=0.967; evalue=8.5e-164; confidence=high
Rice	`Os03g0254400` (OspPLAIIIalpha) - identity=53.3; qcov=0.936; evalue=1.3e-117; confidence=high
GO	GO:0006629 (lipid metabolic process)
KEGG	-
Pfam	PF01734 (Patatin)
InterPro	-
eggNOG	-
NR	GeneID:131014911

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057799055.1`
2	Cytosol	细胞质基质	0.40000	`XP_057799052.1`
3	Cytoplasm	细胞质	0.20000	`XP_057799055.1`
4	Nucleus	细胞核	0.00000	`XP_057799052.1`
5	Chromosome	染色体	0.00000	`XP_057799052.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:59270083`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr3:59270623`	`A`	`AAT`	2bp_insertion	frameshift_variant	3	B60,C23,C42
`Chr3:59270623`	`A`	`AAT`	2bp_insertion	CDS_variant	3	B60,C23,C42
`Chr3:59271922`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B19,C57
`Chr3:59271967`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr3:59272087`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:59272224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr3:59272327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B48,C78
`Chr3:59272334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr3:59272360`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr3:59272463`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B22,B42,B43,B94
`Chr3:59272507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B22,B42,B43,B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799052.1

471 aa

236

471

Patatin

PF01734 Patatin 85-300 aa

XP_057799053.1

471 aa

236

471

Patatin

PF01734 Patatin 85-300 aa

XP_057799054.1

471 aa

236

471

Patatin

PF01734 Patatin 85-300 aa

XP_057799055.1

393 aa

196

393

Patatin

PF01734 Patatin 85-300 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799052.1`	Pfam	`PF01734`	Patatin	Domain	85	300	3.4e-17	64.0	Patatin-like phospholipase
`XP_057799053.1`	Pfam	`PF01734`	Patatin	Domain	85	300	3.4e-17	64.0	Patatin-like phospholipase
`XP_057799054.1`	Pfam	`PF01734`	Patatin	Domain	85	300	3.4e-17	64.0	Patatin-like phospholipase
`XP_057799055.1`	Pfam	`PF01734`	Patatin	Domain	85	300	2.3e-17	64.6	Patatin-like phospholipase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057943069.1
AGTACAGTAAAGTCGTCGTAGATTGGCGCGATAAAACTTTTTTTCCTTTCTTTTTTTCATTCTTCCCTTTTTATATTTGTTTAATTTAAAACTTTTTTCCTTTTTTTTTTTATAAAAAGGCTACACAAAACAAACATGCTCTGCAAAAACTGGATTTTGTGTTGTAGTTTGCTGCCCCCTTTCTCTCTCATCTCTCTCCTGATTGTGTAATCCTTTTGACGCCTTCTCCCTCTATCGTCGGCAATCAGCAATAAATATTA...

XM_057943071.1
AAAACTTTTTTCCTTTTTTTTTTTATAAAAAGGCTACACAAAACAAACATGCTCTGCAAAAACTGGATTTTGTGTTGTAGTTTGCTGCCCCCTTTCTCTCTCATCTCTCTCCTGATTGTGTAATCCTTTTGACGCCTTCTCCCTCTATCGTCGGCAATCAGCAATAAATATTACACAATCCTAAAACCTTATTCTTCCGCCATTTGTACGCAGCAAACCAATTCAAGAGACATATAATCGGATGACGTGAAGAGATTTTC...

CDS

4 records

下载 CDS FASTA

LOC131014911
ATGGCGTGTGTTGATGTTAACGACGACCGTAGCATCAATCCAATGATTGGATTGCAGGAGCCGAGCATCGATACCGACAAATTGAGCTATGAAATTTTCTCCATTTTGGAGAGCAAGTTTTTGTTCGGCTACGACGATCAGCAGCTTTGGGTACAGAAGCCGATTGCGGTGCAACCGAAGAGCGCCGTCGTTCCAGGCATCGACGACGGCGGAGTTCAGGTGGCGAAGAATCAGAGGGGGAAAATCTGCATCCTGAGCAT...

Protein

4 records

下载 Protein FASTA

XP_057799052.1
MACVDVNDDRSINPMIGLQEPSIDTDKLSYEIFSILESKFLFGYDDQQLWVQKPIAVQPKSAVVPGIDDGGVQVAKNQRGKICILSIDGAGMRSILSGKTLAYLETALKNKSGNPDARIADYFDVAAGTGVGGIFTAMLFAAGDQNRPIFHADDTWKFLAAEGKKVYSLARTRSSRNGFLKRVFKKSGSGGGGSSTAGMEKAMKEAFKDERTGRSLTLKDTLKPVLIPCYDLSSAAPFLFSRADALESDSFDFNLWEVCL...

XP_057799053.1
MACVDVNDDRSINPMIGLQEPSIDTDKLSYEIFSILESKFLFGYDDQQLWVQKPIAVQPKSAVVPGIDDGGVQVAKNQRGKICILSIDGAGMRSILSGKTLAYLETALKNKSGNPDARIADYFDVAAGTGVGGIFTAMLFAAGDQNRPIFHADDTWKFLAAEGKKVYSLARTRSSRNGFLKRVFKKSGSGGGGSSTAGMEKAMKEAFKDERTGRSLTLKDTLKPVLIPCYDLSSAAPFLFSRADALESDSFDFNLWEVCL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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