当前解析结果
SmilChr03G004046| 统一新 Gene ID | SmilChr03G004046 |
|---|---|
| 名称 | SmilChr03G004046 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 59440091 - 59443739 / - |
| NCBI Gene ID | LOC131014880 |
|---|---|
| GeneID | 131014880 |
| locus_tag | - |
| NCBI Name | LOC131014880 |
| 原始查询 | SmilChr03G004046 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=28.4; qcov=0.906; evalue=3.99e-73; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=29.7; qcov=0.965; evalue=1.27e-83; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014880 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057798998.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057798998.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057798998.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798998.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798998.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:59441044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr3:59441051 |
A |
AC |
1bp_insertion | frameshift_variant | 3 | B10,B83,C45 |
Chr3:59441051 |
A |
AC |
1bp_insertion | CDS_variant | 3 | B10,B83,C45 |
Chr3:59441052 |
T |
TAA |
2bp_insertion | frameshift_variant | 26 | A8,A9,B1,B108,B109,B118,B119,B122,B46,B48,B56,B58,B8,B94,B98,C18,C19,C20,C22,C23,C30,C33,C37,C46,C48,C83 |
Chr3:59441075 |
GA |
G |
1bp_deletion | frameshift_variant | 66 | A11,A14,A20,A24,A4,B10,B100,B102,B112,B117,B119,B12,B120,B123,B126,B131,B136,B137,B16,B2,B20,B25,B28,B33,B44,B47,B51,B54,B55,B61,B66,B67,B70,B74,B76,B8,B92,B95,B99,C12,C13,C21,C26,C27,C28,C31,C32,C37,C39,C40,C47,C49,C55,C63,C67,C68,C71,C72,C73,C78,C79,C80,C85,C9,D1,D4 |
Chr3:59441103 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr3:59441135 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C83,D10 |
Chr3:59441190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr3:59441204 |
ACT |
A |
2bp_deletion | frameshift_variant | 69 | A13,A18,A23,A24,A5,B106,B117,B120,B123,B124,B125,B128,B13,B135,B139,B14,B19,B20,B27,B3,B32,B34,B35,B36,B41,B45,B48,B49,B5,B53,B55,B58,B62,B75,B77,B78,B79,B87,B93,B94,B99,C12,C14,C16,C2,C21,C24,C28,C39,C4,C43,C50,C53,C57,C59,C61,C64,C65,C66,C7,C73,C79,C80,C81,D2,D3,D5,D6,D7 |
Chr3:59441208 |
A |
ATT |
2bp_insertion | frameshift_variant | 72 | A13,A18,A23,A24,A5,B106,B108,B117,B120,B123,B124,B125,B128,B13,B135,B139,B14,B19,B2,B20,B27,B3,B32,B34,B35,B36,B41,B45,B48,B49,B5,B55,B58,B62,B75,B77,B78,B79,B87,B93,B94,B99,C12,C14,C16,C18,C2,C24,C28,C29,C31,C39,C4,C43,C50,C53,C57,C59,C61,C64,C65,C66,C7,C73,C79,C80,C81,D2,D3,D5,D6,D7 |
Chr3:59441218 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr3:59441235 |
C |
T |
EMS_canonical_SNV | stop_gained | 152 | A1,A14,A18,A19,A2,A24,A3,A4,A5,A7,B10,B104,B105,B106,B107,B108,B109,B11,B110,B113,B114,B115,B117,B119,B12,B120,B121,B124,B125,B127,B129,B134,B135,B136,B137,B138,B139,B140,B15,B16,B18,B19,B2,B20,B25,B27,B3,B30,B33,B34,B35,B37,B40,B42,B43,B47,B48,B49,B52,B53,B55,B59,B60,B61,B62,B63,B66,B68,B69,B70,B71,B72,B73,B74,B75,B76,B8,B80,B83,B84,B86,B89,B9,B92,B93,B97,B98,B99,C1,C12,C14,C15,C17,C18,C19,C2,C20,C22,C25,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C37,C38,C39,C40,C42,C43,C45,C46,C47,C49,C5,C50,C51,C52,C53,C55,C57,C58,C6,C60,C61,C62,C63,C64,C68,C7,C70,C71,C73,C75,C77,C78,C79,C80,C81,C83,D10,D3,D4,D5,D6,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798998.1PF00931
NB-ARC 143-331 aa
PF23559
WHD_DRP 410-483 aa
PF23598
LRR_14 544-735 aa
XP_057798999.1PF00931
NB-ARC 143-331 aa
PF23559
WHD_DRP 410-483 aa
PF23598
LRR_14 544-735 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798998.1 |
Pfam | PF00931 |
NB-ARC | Domain | 143 | 331 | 7.6e-41 | 140.3 | NB-ARC domain |
XP_057798998.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 410 | 483 | 3.5e-20 | 72.5 | Disease resistance protein Winged helix domain |
XP_057798998.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 544 | 735 | 1.2e-19 | 71.1 | Leucine-rich repeat region |
XP_057798999.1 |
Pfam | PF00931 |
NB-ARC | Domain | 143 | 331 | 7.6e-41 | 140.3 | NB-ARC domain |
XP_057798999.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 410 | 483 | 3.5e-20 | 72.5 | Disease resistance protein Winged helix domain |
XP_057798999.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 544 | 735 | 1.2e-19 | 71.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。