当前解析结果
SmilChr03G004072| 统一新 Gene ID | SmilChr03G004072 |
|---|---|
| 名称 | SmilChr03G004072 |
| 描述 | uncharacterized SmilChr03G004072 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 59686845 - 59689097 / - |
| NCBI Gene ID | LOC131019078 |
|---|---|
| GeneID | 131019078 |
| locus_tag | - |
| NCBI Name | LOC131019078 |
| 原始查询 | SmilChr03G004072 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Uncharacterized protein family (UPF0114) [Source:NCBI gene (formerly Entrezgene);Acc:827680]; symbol=AT4G19390; hit=AT4G19390; species=arabidopsis; confidence=high |
| 产物 | Uncharacterized protein family (UPF0114) [Source:NCBI gene (formerly Entrezgene);Acc:827680]; symbol=AT4G19390; hit=AT4G19390; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G19390 (AT4G19390)Uncharacterized protein family (UPF0114) [Source:NCBI gene (formerly Entrezgene);Acc:827680] identity=67; qcov=0.765; evalue=9.16e-81; confidence=high |
| Rice | Os06g0710300- identity=63.4; qcov=0.748; evalue=3.78e-70; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF03350 (UPF0114) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019078 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057803743.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057803743.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057803743.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803743.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803743.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:59687055 |
AG |
A |
1bp_deletion | frameshift_variant | 21 | A16,A21,A24,A9,B107,B18,B19,B26,B4,B40,B46,B63,B65,B74,B83,C18,C2,C39,C61,C66,C87 |
Chr3:59687187 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B13,B29,B97,C52 |
Chr3:59687412 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,C73 |
Chr3:59687413 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr3:59687445 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B133,B28,D9 |
Chr3:59688880 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr3:59688930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr3:59688936 |
A |
AC |
1bp_insertion | frameshift_variant | 65 | A13,A20,A21,A4,B11,B112,B114,B117,B118,B121,B122,B124,B127,B128,B14,B18,B24,B25,B26,B27,B30,B31,B33,B35,B36,B51,B56,B59,B6,B61,B63,B67,B68,B69,B72,B74,B75,B79,B8,B81,B82,B88,B96,B97,B98,C12,C13,C16,C20,C21,C26,C36,C37,C52,C64,C65,C66,C67,C75,C76,C8,C83,C87,D5,D7 |
Chr3:59688938 |
CT |
C |
1bp_deletion | frameshift_variant | 64 | A13,A20,A21,A4,B11,B112,B114,B117,B118,B121,B122,B124,B127,B128,B14,B18,B24,B25,B26,B27,B30,B31,B35,B36,B51,B56,B59,B6,B61,B63,B67,B68,B69,B72,B74,B75,B79,B8,B81,B82,B88,B96,B97,B98,C12,C13,C16,C20,C21,C26,C36,C37,C52,C64,C65,C66,C67,C75,C76,C8,C83,C87,D5,D7 |
Chr3:59689004 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B46,B48,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803743.1PF03350
UPF0114 68-200 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803743.1 |
Pfam | PF03350 |
UPF0114 | Family | 68 | 200 | 2.1e-37 | 128.7 | Uncharacterized protein family, UPF0114 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。