Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004076`

染色体: Chr03 坐标: 59702278-59705993 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004076`
名称	SmilChr03G004076
描述	uncharacterized SmilChr03G004076
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	59702278 - 59705993 / `+`

ID 对照

NCBI Gene ID	`LOC131014893`
GeneID	`131014893`
locus_tag	`-`
NCBI Name	`LOC131014893`
原始查询	`SmilChr03G004076`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	las1-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:831096]; symbol=AT5G12220; hit=AT5G12220; species=arabidopsis; confidence=low
产物	las1-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:831096]; symbol=AT5G12220; hit=AT5G12220; species=arabidopsis; confidence=low
Arabidopsis	`AT5G12220` (AT5G12220) las1-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:831096] identity=34.6; qcov=0.968; evalue=1.26e-80; confidence=low
Rice	`Os12g0189900` - identity=33; qcov=0.966; evalue=1.46e-67; confidence=low
GO	GO:0000460 (maturation of 5.8S rRNA); GO:0000470 (maturation of LSU-rRNA); GO:0004519 (endonuclease activity); GO:0030687 (preribosome, large subunit precursor); GO:0090730 (Las1 complex)
KEGG	-
Pfam	PF04031 (Las1)
InterPro	-
eggNOG	-
NR	GeneID:131014893

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799020.1`
2	Chromosome	染色体	0.00000	`XP_057799020.1`
3	Centromere	着丝粒	0.00000	`XP_057799020.1`
4	Chromatin	染色质	0.00000	`XP_057799020.1`
5	Telomere	端粒	0.00000	`XP_057799020.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:59702408`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,C40,C85,D10
`Chr3:59702474`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:59703163`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr3:59703203`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:59703648`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr3:59704328`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr3:59704358`	`ATC`	`A`	2bp_deletion	frameshift_variant	1	C82
`Chr3:59704358`	`ATC`	`A`	2bp_deletion	CDS_variant	1	C82
`Chr3:59704555`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,B99
`Chr3:59704785`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr3:59704831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B135,B137,B83,C51,C59
`Chr3:59704835`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B135,B137,B83,C51,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799020.1

617 aa

308

617

Las1

PF04031 Las1 26-176 aa

XP_057799022.1

586 aa

293

586

Las1

PF04031 Las1 60-145 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799020.1`	Pfam	`PF04031`	Las1	Family	26	176	5.5e-44	150.5	Las1-like
`XP_057799022.1`	Pfam	`PF04031`	Las1	Family	60	145	4.1e-27	95.7	Las1-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943037.1
AAGACAAATGCTTCATTGAAAACCGGGTCTTCTCTGTCAAAGCTTTCAATTGAATCCTGCGAAGAGAAACAGAGCATTATGGAGTCTTTGTTAGGGTTTAAGGAGCAGGAGCCAAACGACGTCGTAGACAGCAAGTCCCAGAGTTTCAAGCTGGTTCCGTGGATGAGCTGGGATGAATGGAAGTTCGTTAGAGGCTCTCTTTTCTCTTCATCGCTTGATTCCGTTGCCTTCGCGCTCCAAAGGATATCGACGTGGCGGAG...

XM_057943039.1
GCTTTCAATTGAATCCTGCGAAGAGAAACAGAGCATTATGGAGTCTTTGTTAGGGTTTAAGGAGCAGGAGCCAAACGACGTCGTAGACAGCAAGTCCCAGAGTTTCAAGCTGGTTCCGTGGATGAGCTGGGATGAATGGAAGTTCGTTAGAGGCTCTCTTTTCTCTTCATCGCTTGATTCCGTTGCCTTCGCGCTCCAAAGGATATCGACGTGGCGGAGCAGAGGGTGCATCCCTGTGGCGGTTGACGTTACTGCTTCCA...

CDS

2 records

下载 CDS FASTA

LOC131014893
ATGGAGTCTTTGTTAGGGTTTAAGGAGCAGGAGCCAAACGACGTCGTAGACAGCAAGTCCCAGAGTTTCAAGCTGGTTCCGTGGATGAGCTGGGATGAATGGAAGTTCGTTAGAGGCTCTCTTTTCTCTTCATCGCTTGATTCCGTTGCCTTCGCGCTCCAAAGGATATCGACGTGGCGGAGCAGAGGGTGCATCCCTGTGGCGGTTGACGTTACTGCTTCCATCGTTGAGATTCAGCAGAAAGATCCCTTTTTTAGAAA...

LOC131014893
ATGAATGGAAGTTCGTTAGAGGCTCTCTTTTCTCTTCATCGCTTGATTCCGTTGCCTTCGCGCTCCAAAGGATATCGACGTGGCGGAGCAGAGGGTGCATCCCTGTGGCGGTTGACGTTACTGCTTCCATCGTTGAGATTCAGCAGAAAGATCCCTTTTTTTAGAAATGAGTTGGATGAAACTGCTTCGCAGTCGGAGGAAATGTTGGCCATGCTATATTGCATGGCTATTGTGAGGCTTGTAAATGGTGTGGTTGAGAA...

Protein

2 records

下载 Protein FASTA

XP_057799020.1
MESLLGFKEQEPNDVVDSKSQSFKLVPWMSWDEWKFVRGSLFSSSLDSVAFALQRISTWRSRGCIPVAVDVTASIVEIQQKDPFFRNELDETASQSEEMLAMLYCMAIVRLVNGVVEKTREKNKISIGEAADAIGIPRMLIDIRHEGSHRDLPSLQLVRLASTKALDWLISYYWEPQEKSIPVQNNKTANLRREIKRSLREISLCLKAKQMSKLSSARVKGKRLKQTELLHGHSKFLVLAAGKSSDSNSTGSKKLLRKAL...

XP_057799022.1
MNGSSLEALFSLHRLIPLPSRSKGYRRGGAEGASLWRLTLLLPSLRFSRKIPFFRNELDETASQSEEMLAMLYCMAIVRLVNGVVEKTREKNKISIGEAADAIGIPRMLIDIRHEGSHRDLPSLQLVRLASTKALDWLISYYWEPQEKSIPVQNNKTANLRREIKRSLREISLCLKAKQMSKLSSARVKGKRLKQTELLHGHSKFLVLAAGKSSDSNSTGSKKLLRKALKNTLRSYSSFSTEVVYLLLEYLLNALEASNL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器