Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004104`

染色体: Chr03 坐标: 59931671-59934123 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004104`
名称	SmilChr03G004104
描述	pre-rRNA-processing protein esf2-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	59931671 - 59934123 / `-`

ID 对照

NCBI Gene ID	`LOC131014970`
GeneID	`131014970`
locus_tag	`-`
NCBI Name	`LOC131014970`
原始查询	`SmilChr03G004104`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pre-rRNA-processing protein esf2-like
产物	pre-rRNA-processing protein esf2-like
Arabidopsis	`AT3G56510` (AT3G56510) RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:824818] identity=61; qcov=0.849; evalue=1.08e-93; confidence=high
Rice	`Os07g0662600` (P0453E03.117) - identity=54.5; qcov=0.841; evalue=3.27e-73; confidence=high
GO	GO:0000447 (endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0000472 (endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0000480 (endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0003723 (RNA binding); GO:0005730 (nucleolus); GO:0034462 (small-subunit processome assembly)
KEGG	-
Pfam	PF27577 (ESF2_C)
InterPro	-
eggNOG	-
NR	GeneID:131014970

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799130.1`
2	Nucleolus	核仁	1.00000	`XP_057799130.1`
3	Nucleolus rim	Nucleolus rim	0.40000	`XP_057799130.1`
4	Chromosome	染色体	0.00000	`XP_057799130.1`
5	Centromere	着丝粒	0.00000	`XP_057799130.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:59931977`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr3:59932093`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B104
`Chr3:59932093`	`GC`	`G`	1bp_deletion	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799130.1

277 aa

138

277

ESF2_C

PF27577 ESF2_C 159-203 aa

XP_057799131.1

251 aa

126

251

ESF2_C

PF27577 ESF2_C 159-203 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799130.1`	Pfam	`PF27577`	ESF2_C	Domain	159	203	1.6e-13	50.6	Pre-rRNA-processing protein ESF2 C-terminal domain
`XP_057799131.1`	Pfam	`PF27577`	ESF2_C	Domain	159	203	1.4e-13	50.8	Pre-rRNA-processing protein ESF2 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943148.1
TAAATATAGTCTTGATATTCATTGAATTTCAGCTAAGCGAGGTCTTATTTTTCACAAATTTCGTATGATCGTATCTGGTGGAATGGCGGAGGAGGAGGAGATGGCGGCGGAGAGAGAGAGCGCGCAAAGTGGGGATGATGCGAGCTTGGATGAAGAAGCTGTGAGGAGAGAGAGACGGAGGGAGAAAAAGAGGAAGCGGCTGTTAAAAGAAGCTGAGAAAGCAGAGAAGCGGGGCGTTTGCTATTTGAGTCGGGTGCCTC...

XM_057943147.1
ATTTCAGCTAAGCGAGGTCTTATTTTTCACAAATTTCGTATGATCGTATCTGGTGGAATGGCGGAGGAGGAGGAGATGGCGGCGGAGAGAGAGAGCGCGCAAAGTGGGGATGATGCGAGCTTGGATGAAGAAGCTGTGAGGAGAGAGAGACGGAGGGAGAAAAAGAGGAAGCGGCTGTTAAAAGAAGCTGAGAAAGCAGAGAAGCGGGGCGTTTGCTATTTGAGTCGGGTGCCTCCGCATATGAATCCGTTGAGGCTTCG...

CDS

2 records

下载 CDS FASTA

LOC131014970
ATGATCGTATCTGGTGGAATGGCGGAGGAGGAGGAGATGGCGGCGGAGAGAGAGAGCGCGCAAAGTGGGGATGATGCGAGCTTGGATGAAGAAGCTGTGAGGAGAGAGAGACGGAGGGAGAAAAAGAGGAAGCGGCTGTTAAAAGAAGCTGAGAAAGCAGAGAAGCGGGGCGTTTGCTATTTGAGTCGGGTGCCTCCGCATATGAATCCGTTGAGGCTTCGCCAAATTCTTTCACAGTATGGAGAAATAGGCCGAGTTTA...

Protein

2 records

下载 Protein FASTA

XP_057799130.1
MIVSGGMAEEEEMAAERESAQSGDDASLDEEAVRRERRREKKRKRLLKEAEKAEKRGVCYLSRVPPHMNPLRLRQILSQYGEIGRVYLTPEDPANQMRRKKSGGFRGQEFSEGWVEFIDKKVAKRVASMLNGEQIGGKKRSSIYYDLWNIKYLSKFKWDDLKEETEIKNATREQKLVLELSAAKKERDFYLSKVDQSKAISKIGERLKKKRKIEMVPKVVRHFPQKRPFGNETGENKGQLSRDILAGVSVYLTLSAILDC...

XP_057799131.1
MIVSGGMAEEEEMAAERESAQSGDDASLDEEAVRRERRREKKRKRLLKEAEKAEKRGVCYLSRVPPHMNPLRLRQILSQYGEIGRVYLTPEDPANQMRRKKSGGFRGQEFSEGWVEFIDKKVAKRVASMLNGEQIGGKKRSSIYYDLWNIKYLSKFKWDDLKEETEIKNATREQKLVLELSAAKKERDFYLSKVDQSKAISKIGERLKKKRKIEMVPKVVRHFPQKRPFGNETGENKGQLSRDILAGVFGS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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