Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004129`

染色体: Chr03 坐标: 60127913-60132164 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004129`
名称	SmilChr03G004129
描述	NAC domain-containing protein 79-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	60127913 - 60132164 / `+`

ID 对照

NCBI Gene ID	`LOC131014999`
GeneID	`131014999`
locus_tag	`-`
NCBI Name	`LOC131014999`
原始查询	`SmilChr03G004129`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NAC domain-containing protein 79-like
产物	NAC domain-containing protein 79-like
Arabidopsis	`AT2G24430` (NAC038) NAC domain containing protein 38 [Source:NCBI gene (formerly Entrezgene);Acc:816979] identity=54.4; qcov=1.04; evalue=9.1e-115; confidence=high
Rice	`Os09g0497900` (ONAC072) - identity=58.6; qcov=0.858; evalue=5.15e-106; confidence=high
GO	GO:0003677 (DNA binding); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF02365 (NAM)
InterPro	-
eggNOG	-
NR	GeneID:131014999

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799166.1`
2	Chromosome	染色体	0.00000	`XP_057799166.1`
3	Centromere	着丝粒	0.00000	`XP_057799166.1`
4	Chromatin	染色质	0.00000	`XP_057799166.1`
5	Telomere	端粒	0.00000	`XP_057799166.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:60128606`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B128,C53
`Chr3:60128668`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B134
`Chr3:60128668`	`CA`	`C`	1bp_deletion	CDS_variant	1	B134
`Chr3:60129056`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr3:60129155`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:60131408`	`G`	`GA`	1bp_insertion	frameshift_variant	2	B59,B99
`Chr3:60131408`	`G`	`GA`	1bp_insertion	CDS_variant	2	B59,B99
`Chr3:60131409`	`A`	`AAT`	2bp_insertion	frameshift_variant	1	A7
`Chr3:60131409`	`A`	`AAT`	2bp_insertion	CDS_variant	1	A7
`Chr3:60131524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B130,B60,C43
`Chr3:60131608`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,A21
`Chr3:60131620`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,B12,B131,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799166.1

324 aa

162

324

NAM

PF02365 NAM 14-140 aa

XP_057799168.1

324 aa

162

324

NAM

PF02365 NAM 14-140 aa

XP_057799169.1

324 aa

162

324

NAM

PF02365 NAM 14-140 aa

XP_057799170.1

324 aa

162

324

NAM

PF02365 NAM 14-140 aa

XP_057799171.1

324 aa

162

324

NAM

PF02365 NAM 14-140 aa

XP_057799172.1

324 aa

162

324

NAM

PF02365 NAM 14-140 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799166.1`	Pfam	`PF02365`	NAM	Family	14	140	6.9e-50	169.3	No apical meristem (NAM) protein
`XP_057799168.1`	Pfam	`PF02365`	NAM	Family	14	140	6.9e-50	169.3	No apical meristem (NAM) protein
`XP_057799169.1`	Pfam	`PF02365`	NAM	Family	14	140	6.9e-50	169.3	No apical meristem (NAM) protein
`XP_057799170.1`	Pfam	`PF02365`	NAM	Family	14	140	6.9e-50	169.3	No apical meristem (NAM) protein
`XP_057799171.1`	Pfam	`PF02365`	NAM	Family	14	140	6.9e-50	169.3	No apical meristem (NAM) protein
`XP_057799172.1`	Pfam	`PF02365`	NAM	Family	14	140	6.9e-50	169.3	No apical meristem (NAM) protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057943189.1
GGCAAAAGAAATATAGTATATATATGAATTTTTCAGCAGTGAAATGGCAAAATATTTTGATTGTTAATACAAAAATTAATTACTGAGTTTAATTTCAAAATGAAAGTCTCAAGTCGTGTAGCATAAGGCCCATAGTAGAAGTTTTTCTTGGAATTTTGAGCATACTAAAGTTGGAAAAGAGAAAAGTGGGGCAAGAAATGGAGGGGTCAGGAAGTCCAGTGAAGGAGGAGAAGCTGCCACCCGGCTTCCGGTTCCACCCG...

XM_057943183.1
GCAATAAATCACACCATTTTTTTTCGATTCATTTCTTCATATATTTATATTCCAACCTTTCTTGCTCACCTCAATCACCCATCTCACAACTAACTCATCTCTTGCAAGAATCCAACACTTATACTTCAACTTCACCATATTTGCTCGATGACGTGAATGCTAACATTTTGATTTCATTTTTTACTACATTCGAAAGTTTTTCTTGGAATTTTGAGCATACTAAAGTTGGAAAAGAGAAAAGTGGGGCAAGAAATGGAGGG...

CDS

6 records

下载 CDS FASTA

LOC131014999
ATGGAGGGGTCAGGAAGTCCAGTGAAGGAGGAGAAGCTGCCACCCGGCTTCCGGTTCCACCCGACCGACGAAGAACTCATCACCTACTATTTAATCAACAAGATCTCCGACGCAACCTTCACCGGAAGGGCCATCGGAGACGTTGATCTCAACAAGTGTGAGCCCTGGGATCTTCCAGGGAAGGCGAAAATGGGAGAGAAAGAGTGGTATTTCTTCAGCCTCCGGGACCGTAAGTATCCGACGGGGGTTCGGACGAACCG...

Protein

6 records

下载 Protein FASTA

XP_057799166.1
MEGSGSPVKEEKLPPGFRFHPTDEELITYYLINKISDATFTGRAIGDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIYNSNTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAYRTNKQDEWVVCRVFQKSAGGKKYPSTQSRAVNPFSYNIDLPQNPMQSQIMQPDNFHFPGRNYMTPAEIQEYNKVFTGAAAAAASTSMINFPVPPQVNYGGGAGAGCFTISGLNL...

XP_057799168.1
MEGSGSPVKEEKLPPGFRFHPTDEELITYYLINKISDATFTGRAIGDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIYNSNTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAYRTNKQDEWVVCRVFQKSAGGKKYPSTQSRAVNPFSYNIDLPQNPMQSQIMQPDNFHFPGRNYMTPAEIQEYNKVFTGAAAAAASTSMINFPVPPQVNYGGGAGAGCFTISGLNL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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