当前解析结果
SmilChr03G004135| 统一新 Gene ID | SmilChr03G004135 |
|---|---|
| 名称 | SmilChr03G004135 |
| 描述 | uncharacterized SmilChr03G004135 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60188638 - 60191973 / - |
| NCBI Gene ID | LOC131015008 |
|---|---|
| GeneID | 131015008 |
| locus_tag | - |
| NCBI Name | LOC131015008 |
| 原始查询 | SmilChr03G004135 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transmembrane protein, putative (Protein of unknown function, DUF599) [Source:NCBI gene (formerly Entrezgene);Acc:829260]; symbol=AT4G31330; hit=AT4G31330; species=arabidopsis; confidence=high |
| 产物 | transmembrane protein, putative (Protein of unknown function, DUF599) [Source:NCBI gene (formerly Entrezgene);Acc:829260]; symbol=AT4G31330; hit=AT4G31330; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G31330 (AT4G31330)transmembrane protein, putative (Protein of unknown function, DUF599) [Source:NCBI gene (formerly Entrezgene);Acc:829260] identity=75.1; qcov=0.946; evalue=3.55e-124; confidence=high |
| Rice | Os08g0521000- identity=57.1; qcov=0.963; evalue=5.32e-88; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF04654 (DUF599) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015008 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799186.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057799186.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057799186.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057799186.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057799186.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60188718 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr3:60188780 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | C40 |
Chr3:60188780 |
CA |
C |
1bp_deletion | CDS_variant | 1 | C40 |
Chr3:60188782 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr3:60188906 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr3:60189085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,A7,B40 |
Chr3:60189152 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A9,B19,B85,B93,C56 |
Chr3:60191453 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr3:60191462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr3:60191472 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr3:60191516 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799186.1PF04654
DUF599 11-215 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799186.1 |
Pfam | PF04654 |
DUF599 | Family | 11 | 215 | 5.3e-77 | 258.7 | Protein of unknown function, DUF599 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。