当前解析结果
SmilChr03G004144| 统一新 Gene ID | SmilChr03G004144 |
|---|---|
| 名称 | SmilChr03G004144 |
| 描述 | uncharacterized SmilChr03G004144 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60277504 - 60279535 / + |
| NCBI Gene ID | LOC131019082 |
|---|---|
| GeneID | 131019082 |
| locus_tag | - |
| NCBI Name | LOC131019082 |
| 原始查询 | SmilChr03G004144 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=weak |
| 产物 | hit=Os06g0484800; species=rice; confidence=weak |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=20.9; qcov=0.874; evalue=6e-10; confidence=weak |
| Rice | Os06g0484800- identity=19.4; qcov=1.11; evalue=2.27e-13; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019082 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803748.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057803748.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057803748.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803748.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803748.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60277968 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr3:60278270 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C23 |
Chr3:60278270 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C23 |
Chr3:60278273 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B45,C76 |
Chr3:60278322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,B94 |
Chr3:60278428 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B67,C4,C87 |
Chr3:60278600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr3:60278605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B121,B17,B39,C9 |
Chr3:60278611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B17,B26,B31,B39,C9 |
Chr3:60278638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,C14,C9 |
Chr3:60278704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B79,C36 |
Chr3:60278740 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B67,C13,C55 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。