当前解析结果
SmilChr03G004158| 统一新 Gene ID | SmilChr03G004158 |
|---|---|
| 名称 | SmilChr03G004158 |
| 描述 | glutamate receptor 2.7-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60362488 - 60378219 / + |
| NCBI Gene ID | LOC131015028 |
|---|---|
| GeneID | 131015028 |
| locus_tag | - |
| NCBI Name | LOC131015028 |
| 原始查询 | SmilChr03G004158 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutamate receptor 2.7-like |
| 产物 | glutamate receptor 2.7-like |
| Arabidopsis | AT2G29120 (GLR2.7)glutamate receptor 2.7 [Source:NCBI gene (formerly Entrezgene);Acc:817460] identity=51.6; qcov=0.926; evalue=0; confidence=high |
| Rice | Os09g0429000 (OsGLR2.1)- identity=46.9; qcov=0.957; evalue=0; confidence=high |
| GO | GO:0004970 (glutamate-gated receptor activity); GO:0005886 (plasma membrane) |
| KEGG | - |
| Pfam | PF00060 (Lig_chan); PF00497 (SBP_bac_3); PF01094 (ANF_receptor); PF10613 (Lig_chan-Glu_bd); PF13458 (Peripla_BP_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015028 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799205.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057799205.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057799205.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799205.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799205.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60362594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr3:60362656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,A7,B40 |
Chr3:60362810 |
T |
TC |
1bp_insertion | frameshift_variant | 8 | B1,B5,B58,B78,C13,C62,C65,C77 |
Chr3:60375406 |
TAG |
T |
2bp_deletion | frameshift_variant | 28 | A14,A15,B101,B109,B117,B126,B129,B130,B135,B18,B2,B24,B28,B3,B33,B40,B54,B64,B70,B75,B85,C16,C23,C31,C47,C58,C71,C84 |
Chr3:60375413 |
TAA |
T |
2bp_deletion | frameshift_variant | 26 | A14,A15,B101,B109,B117,B126,B129,B18,B2,B24,B28,B3,B33,B40,B54,B64,B70,B75,B85,C16,C23,C31,C47,C58,C71,C84 |
Chr3:60375418 |
C |
CAA |
2bp_insertion | frameshift_variant | 26 | A14,A15,B101,B109,B117,B126,B129,B18,B2,B24,B28,B3,B33,B40,B54,B64,B70,B75,B85,C16,C23,C31,C47,C58,C71,C84 |
Chr3:60375420 |
C |
CCA |
2bp_insertion | frameshift_variant | 26 | A14,A15,B101,B109,B117,B126,B129,B18,B2,B24,B28,B3,B33,B40,B54,B64,B70,B75,B85,C16,C23,C31,C47,C58,C71,C84 |
Chr3:60375427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B136,B26,C45 |
Chr3:60375455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B60,B73,B9 |
Chr3:60375477 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:60375503 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B106,B119,B23,B65,C72 |
Chr3:60375654 |
AG |
A |
1bp_deletion | frameshift_variant | 7 | A19,B115,B95,C27,C3,C5,C6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799205.1PF13458
Peripla_BP_6 33-404 aa
PF01094
ANF_receptor 53-404 aa
PF10613
Lig_chan-Glu_bd 484-574 aa
PF00497
SBP_bac_3 487-800 aa
PF00060
Lig_chan 591-833 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799205.1 |
Pfam | PF13458 |
Peripla_BP_6 | Family | 33 | 404 | 1.7e-22 | 81.2 | Periplasmic binding protein |
XP_057799205.1 |
Pfam | PF01094 |
ANF_receptor | Domain | 53 | 404 | 4.6e-84 | 283.2 | Receptor family ligand binding region |
XP_057799205.1 |
Pfam | PF10613 |
Lig_chan-Glu_bd | Domain | 484 | 574 | 4.7e-10 | 40.3 | Ligated ion channel L-glutamate- and glycine-binding site |
XP_057799205.1 |
Pfam | PF00497 |
SBP_bac_3 | Domain | 487 | 800 | 4.2e-10 | 40.2 | Bacterial extracellular solute-binding proteins, family 3 |
XP_057799205.1 |
Pfam | PF00060 |
Lig_chan | Family | 591 | 833 | 2.8e-31 | 109.0 | Ligand-gated ion channel |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。