当前解析结果
SmilChr03G004166| 统一新 Gene ID | SmilChr03G004166 |
|---|---|
| 名称 | SmilChr03G004166 |
| 描述 | ubiquitin carboxyl-terminal hydrolase 18-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60423021 - 60429410 / + |
| NCBI Gene ID | LOC131015037 |
|---|---|
| GeneID | 131015037 |
| locus_tag | - |
| NCBI Name | LOC131015037 |
| 原始查询 | SmilChr03G004166 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ubiquitin carboxyl-terminal hydrolase 18-like |
| 产物 | ubiquitin carboxyl-terminal hydrolase 18-like |
| Arabidopsis | AT2G24640 (UBP19)ubiquitin-specific protease 19 [Source:NCBI gene (formerly Entrezgene);Acc:817000] identity=61.2; qcov=0.658; evalue=0; confidence=high |
| Rice | Os06g0654000- identity=64.1; qcov=0.531; evalue=0; confidence=medium |
| GO | GO:0004197 (cysteine-type endopeptidase activity); GO:0004843 (cysteine-type deubiquitinase activity); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0016579 (protein deubiquitination) |
| KEGG | - |
| Pfam | PF00443 (UCH); PF01753 (zf-MYND); PF13423 (UCH_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015037 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057799212.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057799212.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057799212.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057799212.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057799212.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60423413 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C18 |
Chr3:60423413 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C18 |
Chr3:60423416 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr3:60425137 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,A3,B57,C34,C8 |
Chr3:60426223 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B30,C33 |
Chr3:60426232 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B38,B39,C77 |
Chr3:60426283 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B108,C23,C78 |
Chr3:60427467 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,B85,C44 |
Chr3:60427474 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr3:60427600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B121,C32,C68 |
Chr3:60428012 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,B85,C44 |
Chr3:60428033 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B9,C30 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799212.1PF01753
zf-MYND 74-111 aa
PF00443
UCH 173-476 aa
PF13423
UCH_1 174-458 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799212.1 |
Pfam | PF01753 |
zf-MYND | Domain | 74 | 111 | 8.1e-09 | 36.1 | MYND finger |
XP_057799212.1 |
Pfam | PF00443 |
UCH | Family | 173 | 476 | 5.3e-54 | 184.2 | Ubiquitin carboxyl-terminal hydrolase |
XP_057799212.1 |
Pfam | PF13423 |
UCH_1 | Domain | 174 | 458 | 2.5e-20 | 74.1 | Ubiquitin carboxyl-terminal hydrolase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。