当前解析结果
SmilChr03G004168| 统一新 Gene ID | SmilChr03G004168 |
|---|---|
| 名称 | SmilChr03G004168 |
| 描述 | fasciclin-like arabinogalactan protein 3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60438161 - 60439717 / - |
| NCBI Gene ID | LOC131015039 |
|---|---|
| GeneID | 131015039 |
| locus_tag | - |
| NCBI Name | LOC131015039 |
| 原始查询 | SmilChr03G004168 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | fasciclin-like arabinogalactan protein 3 |
| 产物 | fasciclin-like arabinogalactan protein 3 |
| Arabidopsis | AT3G12660 (FLA14)FASCICLIN-like arabinogalactan protein 14 [Source:NCBI gene (formerly Entrezgene);Acc:820446] identity=42.3; qcov=0.593; evalue=1.46e-35; confidence=medium |
| Rice | Os02g0461500 (OsFLA20)- identity=38.2; qcov=0.755; evalue=3.94e-42; confidence=medium |
| GO | GO:0005886 (plasma membrane) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015039 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057799214.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057799214.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799214.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799214.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799214.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60438622 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr3:60438635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B112,B74 |
Chr3:60438660 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B112,B74 |
Chr3:60438670 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B112,B74 |
Chr3:60438692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,B74 |
Chr3:60438762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr3:60438863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B23,B49,B85,B97,C55 |
Chr3:60438873 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr3:60438883 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B74,C64,C66 |
Chr3:60438899 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B112,B74 |
Chr3:60438921 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr3:60438924 |
G |
GT |
1bp_insertion | frameshift_variant | 2 | B20,D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。