当前解析结果
SmilChr03G004169| 统一新 Gene ID | SmilChr03G004169 |
|---|---|
| 名称 | SmilChr03G004169 |
| 描述 | probable xyloglucan glycosyltransferase 5 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60443820 - 60446787 / + |
| NCBI Gene ID | LOC131015041 |
|---|---|
| GeneID | 131015041 |
| locus_tag | - |
| NCBI Name | LOC131015041 |
| 原始查询 | SmilChr03G004169 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable xyloglucan glycosyltransferase 5 |
| 产物 | probable xyloglucan glycosyltransferase 5 |
| Arabidopsis | AT2G24630 (ATCSLC08)Glycosyl transferase family 2 protein [Source:NCBI gene (formerly Entrezgene);Acc:816999] identity=70.3; qcov=1.04; evalue=0; confidence=high |
| Rice | Os05g0510800 (OsCslC7)- identity=61.3; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005794 (Golgi apparatus); GO:0016757 (glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00535 (Glycos_transf_2); PF13506 (Glyco_transf_21); PF13632 (Glyco_trans_2_3); PF13641 (Glyco_tranf_2_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015041 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057799219.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057799219.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057799219.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057799219.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057799219.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60444282 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr3:60444354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr3:60444390 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:60444404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C19,C4 |
Chr3:60444413 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr3:60444450 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr3:60444505 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B112,B74 |
Chr3:60444561 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr3:60444700 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B35 |
Chr3:60444700 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B35 |
Chr3:60444703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr3:60444768 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,B74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799219.1PF13506
Glyco_transf_21 207-497 aa
PF13641
Glyco_tranf_2_3 215-448 aa
PF00535
Glycos_transf_2 220-376 aa
PF13632
Glyco_trans_2_3 309-518 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799219.1 |
Pfam | PF13506 |
Glyco_transf_21 | Domain | 207 | 497 | 4e-13 | 49.7 | Glycosyl transferase family 21 |
XP_057799219.1 |
Pfam | PF13641 |
Glyco_tranf_2_3 | Domain | 215 | 448 | 8.8e-12 | 45.9 | Glycosyltransferase like family 2 |
XP_057799219.1 |
Pfam | PF00535 |
Glycos_transf_2 | Domain | 220 | 376 | 6.2e-07 | 30.2 | Glycosyl transferase family 2 |
XP_057799219.1 |
Pfam | PF13632 |
Glyco_trans_2_3 | Domain | 309 | 518 | 2e-18 | 67.6 | Glycosyl transferase family group 2 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。