Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004170`

染色体: Chr03 坐标: 60447240-60450777 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004170`
名称	SmilChr03G004170
描述	probable cyclic nucleotide-gated ion channel 14
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	60447240 - 60450777 / `-`

ID 对照

NCBI Gene ID	`LOC131015040`
GeneID	`131015040`
locus_tag	`-`
NCBI Name	`LOC131015040`
原始查询	`SmilChr03G004170`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable cyclic nucleotide-gated ion channel 14
产物	probable cyclic nucleotide-gated ion channel 14
Arabidopsis	`AT2G24610` (CNGC14) cyclic nucleotide-gated channel 14 [Source:NCBI gene (formerly Entrezgene);Acc:816997] identity=71.5; qcov=0.995; evalue=0; confidence=high
Rice	`Os02g0789100` (OsCNGC5) - identity=65.6; qcov=0.995; evalue=0; confidence=high
GO	GO:0005249 (voltage-gated potassium channel activity); GO:0006813 (potassium ion transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00027 (cNMP_binding); PF00520 (Ion_trans)
InterPro	-
eggNOG	-
NR	GeneID:131015040

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057799216.1`
2	Nucleus	细胞核	0.00000	`XP_057799216.1`
3	Chromosome	染色体	0.00000	`XP_057799216.1`
4	Centromere	着丝粒	0.00000	`XP_057799216.1`
5	Chromatin	染色质	0.00000	`XP_057799216.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:60447557`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:60447663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B55,D10,D11
`Chr3:60447700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C18,D6
`Chr3:60447708`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr3:60447737`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B23,B40,C48,C55
`Chr3:60447820`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr3:60447829`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B127,C84,D2
`Chr3:60447921`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr3:60447925`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr3:60448376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr3:60448394`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr3:60448460`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C59,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799216.1

730 aa

365

730

Ion_trans

cNMP_binding

PF00520 Ion_trans 84-411 aa PF00027 cNMP_binding 507-596 aa

XP_057799217.1

616 aa

308

616

Ion_trans

cNMP_binding

PF00520 Ion_trans 42-297 aa PF00027 cNMP_binding 393-482 aa

XP_057799218.1

564 aa

282

564

Ion_trans

cNMP_binding

PF00520 Ion_trans 7-245 aa PF00027 cNMP_binding 341-430 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799216.1`	Pfam	`PF00520`	Ion_trans	Family	84	411	2.1e-20	73.7	Ion transport protein
`XP_057799216.1`	Pfam	`PF00027`	cNMP_binding	Domain	507	596	8e-08	32.8	Cyclic nucleotide-binding domain
`XP_057799217.1`	Pfam	`PF00520`	Ion_trans	Family	42	297	1.8e-16	60.8	Ion transport protein
`XP_057799217.1`	Pfam	`PF00027`	cNMP_binding	Domain	393	482	5.8e-08	33.3	Cyclic nucleotide-binding domain
`XP_057799218.1`	Pfam	`PF00520`	Ion_trans	Family	7	245	1.6e-16	61.0	Ion transport protein
`XP_057799218.1`	Pfam	`PF00027`	cNMP_binding	Domain	341	430	5.3e-08	33.4	Cyclic nucleotide-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057943233.1
TAAAATTAAGTAACGTTTAAGAGCTAGGAGAATTAATGTCGTAAATTTAGTTTCCTTTGAATTCTCACGTCCAAAACATCTTCTCTCCCTCTCTCTCCTCTTTCGGTTTCCATTACTGCACGGTTAAATGCCTGACAAAATAGCTGTTTCTTATAGTATTTCATTTTGCAGCCATTTATTGATGAACATTTTAATGGCAAGTCAACTTCAAGCGAATTTGAGGTTCCACTTCATTGATGAGAAGACAGTTTTCTGTCAAT...

XM_057943234.1
ACTCAAAAAACCCATGGAAATCTGATGTTGGATTTGGGGAGAACAAGGTTCCTAAATTTGGTAGGTCTAAGGTTTTCCCAGAAGGTCAGGAGCCAGAAAAGAGAAGAATCTTGGATCCTGGGAGTGATCTTGTGTTGAAATGGAACAGGATTTTCTTGTGTTCTTGTTTGGTGGCACTCTTTGTGGATCCCTTGTTTTTCTATCTGCCTTCTGTGCTGAATCAGGTCACTGGGAATTCTTCATGACTGCTTATGTTTCTC...

CDS

3 records

下载 CDS FASTA

LOC131015040
ATGGACTTCAAGAGAGAGAAACAAGTTAGGTTCCAAAATGAAGAAAAAGGAAATCTTGATGTTTCATGGGAGAAAAATGGGCATGAAAAAAAACTACCTATGTACAAAAACTCAAAAAACCCATGGAAATCTGATGTTGGATTTGGGGAGAACAAGGTTCCTAAATTTGGTAGGTCTAAGGTTTTCCCAGAAGGTCAGGAGCCAGAAAAGAGAAGAATCTTGGATCCTGGGAGTGATCTTGTGTTGAAATGGAACAGGAT...

LOC131015040
ATGGAACAGGATTTTCTTGTGTTCTTGTTTGGTGGCACTCTTTGTGGATCCCTTGTTTTTCTATCTGCCTTCTGTGCTGAATCAGGTCACTGGGAATTCTTCATGACTGCTTATGTTTCTCCTAGCTCAAGGGTGTTTGGCAAGGGTGAACTTGTCATGGATCTTGACAAGATTGCAAAGAGGTATTTGAGGTCTGAGTTCTTGATCGACGCCATTGCAGCCCTTCCTCTTCCTCAGATTGTGATATGGTCGATATTGCC...

Protein

3 records

下载 Protein FASTA

XP_057799216.1
MDFKREKQVRFQNEEKGNLDVSWEKNGHEKKLPMYKNSKNPWKSDVGFGENKVPKFGRSKVFPEGQEPEKRRILDPGSDLVLKWNRIFLCSCLVALFVDPLFFYLPSVLNQVTGNSSCMHIDLNLGIVVTCFRTLADVLYLLHVIIKFRTAYVSPSSRVFGKGELVMDLDKIAKRYLRSEFLIDAIAALPLPQIVIWSILPAIRSSHADHTNNALILIVLLQYIPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYM...

XP_057799217.1
MEQDFLVFLFGGTLCGSLVFLSAFCAESGHWEFFMTAYVSPSSRVFGKGELVMDLDKIAKRYLRSEFLIDAIAALPLPQIVIWSILPAIRSSHADHTNNALILIVLLQYIPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYVLSIQRHATCWKSACRAETASTGCSLDFLDCGALLRGDRQKWANTTYVFKRCNPGDTTYFNYGIFGNAVANNVVSSDFVEKYFYCLWWGLQNLSSYGQTLATS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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