当前解析结果
SmilChr03G004173| 统一新 Gene ID | SmilChr03G004173 |
|---|---|
| 名称 | SmilChr03G004173 |
| 描述 | trans-Golgi network-localized SYP41-interacting protein 1 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60467104 - 60478052 / - |
| NCBI Gene ID | LOC131015043 |
|---|---|
| GeneID | 131015043 |
| locus_tag | - |
| NCBI Name | LOC131015043 |
| 原始查询 | SmilChr03G004173 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | trans-Golgi network-localized SYP41-interacting protein 1 |
| 产物 | trans-Golgi network-localized SYP41-interacting protein 1 |
| Arabidopsis | AT4G31570 (AT4G31570)nucleoporin [Source:NCBI gene (formerly Entrezgene);Acc:829284] identity=41.6; qcov=0.706; evalue=0; confidence=medium |
| Rice | Os02g0148300- identity=50; qcov=0.122; evalue=3.42e-83; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015043 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057799223.1 |
| 2 | Trans-golgi network | Trans-golgi network | 0.60000 | XP_057799223.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057799223.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057799223.1 |
| 5 | Endosome | 内体 | 0.20000 | XP_057799223.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60468904 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:60468916 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr3:60469187 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr3:60469188 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B61,B81,C13,C56,D8 |
Chr3:60469418 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B57,C72 |
Chr3:60469710 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr3:60469792 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B83,C37,C76 |
Chr3:60469826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B42,B43,C72 |
Chr3:60469943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr3:60470022 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,B28 |
Chr3:60470029 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C43 |
Chr3:60470039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。