当前解析结果
SmilChr03G004180| 统一新 Gene ID | SmilChr03G004180 |
|---|---|
| 名称 | SmilChr03G004180 |
| 描述 | exocyst complex component EXO70A1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60530239 - 60533198 / + |
| NCBI Gene ID | LOC131015052 |
|---|---|
| GeneID | 131015052 |
| locus_tag | - |
| NCBI Name | LOC131015052 |
| 原始查询 | SmilChr03G004180 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exocyst complex component EXO70A1-like |
| 产物 | exocyst complex component EXO70A1-like |
| Arabidopsis | AT4G31540 (EXO70G1)exocyst subunit exo70 family protein G1 [Source:NCBI gene (formerly Entrezgene);Acc:829281] identity=69.5; qcov=0.996; evalue=0; confidence=high |
| Rice | Os06g0698600 (OsEXO70G2)- identity=56; qcov=0.978; evalue=0; confidence=high |
| GO | GO:0000145 (exocyst); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0006887 (exocytosis) |
| KEGG | - |
| Pfam | PF03081 (Exo70_C); PF20669 (Exo70_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015052 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057799231.1 |
| 2 | Cell membrane | 细胞膜 | 0.80000 | XP_057799231.1 |
| 3 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.40000 | XP_057799231.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057799231.1 |
| 5 | Endocytic vesicle | Endocytic vesicle | 0.20000 | XP_057799231.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60531135 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:60531157 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr3:60531174 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:60531272 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,B74 |
Chr3:60531342 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr3:60531346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A7,B27,B40 |
Chr3:60531391 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,B41,B74 |
Chr3:60531456 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr3:60531477 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr3:60531585 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,B94 |
Chr3:60531738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,C1 |
Chr3:60531766 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,B83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799231.1PF20669
Exo70_N 73-188 aa
PF03081
Exo70_C 279-636 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799231.1 |
Pfam | PF20669 |
Exo70_N | Repeat | 73 | 188 | 1.3e-10 | 42.1 | Exocyst complex component Exo70 N-terminal |
XP_057799231.1 |
Pfam | PF03081 |
Exo70_C | Repeat | 279 | 636 | 1.5e-101 | 340.8 | Exo70 exocyst complex subunit C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。