当前解析结果
SmilChr03G004192| 统一新 Gene ID | SmilChr03G004192 |
|---|---|
| 名称 | SmilChr03G004192 |
| 描述 | plasma membrane ATPase 4-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60594017 - 60600197 / + |
| NCBI Gene ID | LOC131015067 |
|---|---|
| GeneID | 131015067 |
| locus_tag | - |
| NCBI Name | LOC131015067 |
| 原始查询 | SmilChr03G004192 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | plasma membrane ATPase 4-like |
| 产物 | plasma membrane ATPase 4-like |
| Arabidopsis | AT2G24520 (HA5)plasma membrane H+-ATPase [Source:NCBI gene (formerly Entrezgene);Acc:816988] identity=85.6; qcov=0.996; evalue=0; confidence=high |
| Rice | Os04g0656100 (AHA7)- identity=86.5; qcov=0.994; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0008553 (P-type proton-exporting transporter activity); GO:0016887 (ATP hydrolysis activity); GO:0051453 (regulation of intracellular pH); GO:0120029 (proton export across plasma membrane) |
| KEGG | smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00122 (E1-E2_ATPase); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase); PF13246 (Cation_ATPase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015067 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799260.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057799260.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057799260.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057799260.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057799260.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60596142 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,C48 |
Chr3:60596174 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr3:60596390 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B87,C1 |
Chr3:60596426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B4,C59 |
Chr3:60596453 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,A20,B50,B74,C75 |
Chr3:60596504 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B35,B42,B43,B87,C1 |
Chr3:60596516 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B49,B79,D6 |
Chr3:60596639 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A25 |
Chr3:60596653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:60596716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A8,B121,C43 |
Chr3:60596750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr3:60596761 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B60,C23,C42,C72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799260.1PF00690
Cation_ATPase_N 21-84 aa
PF00122
E1-E2_ATPase 134-232 aa
PF00702
Hydrolase 328-605 aa
PF13246
Cation_ATPase 376-496 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799260.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 21 | 84 | 9.4e-16 | 57.9 | Cation transporter/ATPase, N-terminus |
XP_057799260.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 134 | 232 | 5.3e-34 | 116.8 | P-type ATPase actuator domain |
XP_057799260.1 |
Pfam | PF00702 |
Hydrolase | Domain | 328 | 605 | 2.6e-16 | 61.3 | haloacid dehalogenase-like hydrolase |
XP_057799260.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 376 | 496 | 2.9e-06 | 27.9 | P-type ATPase, cytoplasmic domain N |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。