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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004195

染色体: Chr03 坐标: 60603162-60606254 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004195
名称SmilChr03G004195
描述putative pentatricopeptide repeat-containing protein At1g10330
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向60603162 - 60606254 / -

ID 对照

NCBI Gene IDLOC131015068
GeneID131015068
locus_tag-
NCBI NameLOC131015068
原始查询SmilChr03G004195

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g10330
产物putative pentatricopeptide repeat-containing protein At1g10330
ArabidopsisAT1G10330 (AT1G10330)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837572]
identity=51.5; qcov=0.981; evalue=5.32e-159; confidence=high
RiceOs05g0271900
-
identity=43.1; qcov=0.958; evalue=2.13e-113; confidence=medium
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:131015068

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057799261.1
2 Nucleus 细胞核 0.00000 XP_057799261.1
3 Chromosome 染色体 0.00000 XP_057799261.1
4 Centromere 着丝粒 0.00000 XP_057799261.1
5 Chromatin 染色质 0.00000 XP_057799261.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:60603803 G A EMS_canonical_SNV CDS_variant 4 B4,C18,C64,C66
Chr3:60603823 G A EMS_canonical_SNV CDS_variant 1 B28
Chr3:60603868 C T EMS_canonical_SNV CDS_variant 2 B30,D6
Chr3:60603912 C T EMS_canonical_SNV CDS_variant 4 B127,B32,C34,C87
Chr3:60604059 G A EMS_canonical_SNV CDS_variant 1 B106
Chr3:60604394 G A EMS_canonical_SNV CDS_variant 4 B124,B53,C1,C33
Chr3:60604489 C T EMS_canonical_SNV CDS_variant 2 B30,D6
Chr3:60604585 C T EMS_canonical_SNV CDS_variant 1 B76
Chr3:60604607 C T EMS_canonical_SNV CDS_variant 3 A14,B10,C71
Chr3:60604689 G A EMS_canonical_SNV CDS_variant 4 B124,B53,C1,C33
Chr3:60604803 C T EMS_canonical_SNV CDS_variant 3 B140,B99,C48
Chr3:60604997 G A EMS_canonical_SNV CDS_variant 2 B30,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799261.1
475 aa
N
1
238
475
PPR_2
PPR
PPR
PPR
PPR_1
PPR
PPR
PPR_2
PPR_3
PPR
PPR
PPR
E_motif
C
PF13041 PPR_2 50-96 aa PF01535 PPR 54-78 aa PF01535 PPR 129-151 aa PF01535 PPR 160-186 aa PF12854 PPR_1 184-213 aa PF01535 PPR 188-216 aa PF01535 PPR 270-295 aa PF13041 PPR_2 296-344 aa PF13812 PPR_3 297-342 aa PF01535 PPR 299-328 aa PF01535 PPR 333-357 aa PF01535 PPR 370-394 aa PF20431 E_motif 413-472 aa
XP_057799262.1
475 aa
N
1
238
475
PPR_2
PPR
PPR
PPR
PPR_1
PPR
PPR
PPR_2
PPR_3
PPR
PPR
PPR
E_motif
C
PF13041 PPR_2 50-96 aa PF01535 PPR 54-78 aa PF01535 PPR 129-151 aa PF01535 PPR 160-186 aa PF12854 PPR_1 184-213 aa PF01535 PPR 188-216 aa PF01535 PPR 270-295 aa PF13041 PPR_2 296-344 aa PF13812 PPR_3 297-342 aa PF01535 PPR 299-328 aa PF01535 PPR 333-357 aa PF01535 PPR 370-394 aa PF20431 E_motif 413-472 aa
XP_057799263.1
475 aa
N
1
238
475
PPR_2
PPR
PPR
PPR
PPR_1
PPR
PPR
PPR_2
PPR_3
PPR
PPR
PPR
E_motif
C
PF13041 PPR_2 50-96 aa PF01535 PPR 54-78 aa PF01535 PPR 129-151 aa PF01535 PPR 160-186 aa PF12854 PPR_1 184-213 aa PF01535 PPR 188-216 aa PF01535 PPR 270-295 aa PF13041 PPR_2 296-344 aa PF13812 PPR_3 297-342 aa PF01535 PPR 299-328 aa PF01535 PPR 333-357 aa PF01535 PPR 370-394 aa PF20431 E_motif 413-472 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799261.1 Pfam PF13041 PPR_2 Repeat 50 96 1.5e-41 141.0 PPR repeat family
XP_057799261.1 Pfam PF01535 PPR Repeat 54 78 3.4e-41 137.4 PPR repeat
XP_057799261.1 Pfam PF01535 PPR Repeat 129 151 3.4e-41 137.4 PPR repeat
XP_057799261.1 Pfam PF01535 PPR Repeat 160 186 3.4e-41 137.4 PPR repeat
XP_057799261.1 Pfam PF12854 PPR_1 Repeat 184 213 5.2e-22 78.0 PPR repeat
XP_057799261.1 Pfam PF01535 PPR Repeat 188 216 3.4e-41 137.4 PPR repeat
XP_057799261.1 Pfam PF01535 PPR Repeat 270 295 3.4e-41 137.4 PPR repeat
XP_057799261.1 Pfam PF13041 PPR_2 Repeat 296 344 1.5e-41 141.0 PPR repeat family
XP_057799261.1 Pfam PF13812 PPR_3 Repeat 297 342 2.8e-17 63.3 Pentatricopeptide repeat domain
XP_057799261.1 Pfam PF01535 PPR Repeat 299 328 3.4e-41 137.4 PPR repeat
XP_057799261.1 Pfam PF01535 PPR Repeat 333 357 3.4e-41 137.4 PPR repeat
XP_057799261.1 Pfam PF01535 PPR Repeat 370 394 3.4e-41 137.4 PPR repeat
XP_057799261.1 Pfam PF20431 E_motif Repeat 413 472 5.2e-12 46.5 E motif
XP_057799262.1 Pfam PF13041 PPR_2 Repeat 50 96 1.5e-41 141.0 PPR repeat family
XP_057799262.1 Pfam PF01535 PPR Repeat 54 78 3.4e-41 137.4 PPR repeat
XP_057799262.1 Pfam PF01535 PPR Repeat 129 151 3.4e-41 137.4 PPR repeat
XP_057799262.1 Pfam PF01535 PPR Repeat 160 186 3.4e-41 137.4 PPR repeat
XP_057799262.1 Pfam PF12854 PPR_1 Repeat 184 213 5.2e-22 78.0 PPR repeat
XP_057799262.1 Pfam PF01535 PPR Repeat 188 216 3.4e-41 137.4 PPR repeat
XP_057799262.1 Pfam PF01535 PPR Repeat 270 295 3.4e-41 137.4 PPR repeat
XP_057799262.1 Pfam PF13041 PPR_2 Repeat 296 344 1.5e-41 141.0 PPR repeat family
XP_057799262.1 Pfam PF13812 PPR_3 Repeat 297 342 2.8e-17 63.3 Pentatricopeptide repeat domain
XP_057799262.1 Pfam PF01535 PPR Repeat 299 328 3.4e-41 137.4 PPR repeat
XP_057799262.1 Pfam PF01535 PPR Repeat 333 357 3.4e-41 137.4 PPR repeat
XP_057799262.1 Pfam PF01535 PPR Repeat 370 394 3.4e-41 137.4 PPR repeat
XP_057799262.1 Pfam PF20431 E_motif Repeat 413 472 5.2e-12 46.5 E motif
XP_057799263.1 Pfam PF13041 PPR_2 Repeat 50 96 1.5e-41 141.0 PPR repeat family
XP_057799263.1 Pfam PF01535 PPR Repeat 54 78 3.4e-41 137.4 PPR repeat
XP_057799263.1 Pfam PF01535 PPR Repeat 129 151 3.4e-41 137.4 PPR repeat
XP_057799263.1 Pfam PF01535 PPR Repeat 160 186 3.4e-41 137.4 PPR repeat
XP_057799263.1 Pfam PF12854 PPR_1 Repeat 184 213 5.2e-22 78.0 PPR repeat
XP_057799263.1 Pfam PF01535 PPR Repeat 188 216 3.4e-41 137.4 PPR repeat
XP_057799263.1 Pfam PF01535 PPR Repeat 270 295 3.4e-41 137.4 PPR repeat
XP_057799263.1 Pfam PF13041 PPR_2 Repeat 296 344 1.5e-41 141.0 PPR repeat family
XP_057799263.1 Pfam PF13812 PPR_3 Repeat 297 342 2.8e-17 63.3 Pentatricopeptide repeat domain
XP_057799263.1 Pfam PF01535 PPR Repeat 299 328 3.4e-41 137.4 PPR repeat
XP_057799263.1 Pfam PF01535 PPR Repeat 333 357 3.4e-41 137.4 PPR repeat
XP_057799263.1 Pfam PF01535 PPR Repeat 370 394 3.4e-41 137.4 PPR repeat
XP_057799263.1 Pfam PF20431 E_motif Repeat 413 472 5.2e-12 46.5 E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057943280.1
CATCATCAATATTTAGGCGAGAGTGTGGGGAACAGGGAGAAGCTTCGCGAGACGCCGGGAAGCAAGGATTTTGTGTGTTTGCCTCTGTTCAAAGATTAATCTGCGTTTCGCCTCTTACGCGATTCAGATTGAAGAAAGTGTTGAATGAAAGATATGGATAATGTGCTGTGCTGAGAAGAGAGATGATGTGCTTCCTTGCATCTCAAAGTCAAAATATGAATGAGAGATAGCTAATAAATTGAATGCTGAGTTTATTTAAT...
XM_057943278.1
CATCATCAATATTTAGGCGAGAGTGTGGGGAACAGGGAGAAGCTTCGCGAGACGCCGGGAAGCAAGGATTTTGTGTGTTTGCCTCTGTTCAAAGATTAATCTGCGTTTCGCCTCTTACGCGATTCAGATTGAAGAAAGTGTTGAATGAAAGATATGGATAATGTGCTGTGCTGAGAAGAGAGATGATGTGCTTCCTTGCATCTCAAAGTCAAAATATGAATGAGAGATAGCTAATAAATTGAATGCTGAGTTTATTTAAT...

CDS

3 records

下载 CDS FASTA
LOC131015068
ATGTTGATATTGCAACCACATCCTGAACTTTTACTCCATCTTCTTCAGCGTTTTAATAGATGTGCTAGTAAGTGTCCGAAACAAGTCAAACAAGTTCATTCCTTGTTAATCACCCATGGTTACCTTCTCATCAGAGATCTATGGGTTAATACTCTCCTATATAATACTCTCATCAGAACATATCTAAATCTTTCTAGACCCCACACTAGCTTAAGCCTCTTCAGGGAGATGCTTCACAGTCAAGCTGCTCCTAATAGCTA...
LOC131015068
ATGTTGATATTGCAACCACATCCTGAACTTTTACTCCATCTTCTTCAGCGTTTTAATAGATGTGCTAGTAAGTGTCCGAAACAAGTCAAACAAGTTCATTCCTTGTTAATCACCCATGGTTACCTTCTCATCAGAGATCTATGGGTTAATACTCTCCTATATAATACTCTCATCAGAACATATCTAAATCTTTCTAGACCCCACACTAGCTTAAGCCTCTTCAGGGAGATGCTTCACAGTCAAGCTGCTCCTAATAGCTA...

Protein

3 records

下载 Protein FASTA
XP_057799261.1
MLILQPHPELLLHLLQRFNRCASKCPKQVKQVHSLLITHGYLLIRDLWVNTLLYNTLIRTYLNLSRPHTSLSLFREMLHSQAAPNSYTFPSVLKAIASLSKSYGTSRIGYSLHAQCVERGLLDDPFVRTSFLSLYSQFGDIRSAHKVFDEIPQPCIVSNNAMLDAFGKGGNMDLAISMFFSMPKRDVYSWTTIINGYAQNGCFMEAIRFFIEMMRDEDVIRGLLRPSEATFVSVLSSCANSDDGLVLYQGKQIHGYMVRI...
XP_057799262.1
MLILQPHPELLLHLLQRFNRCASKCPKQVKQVHSLLITHGYLLIRDLWVNTLLYNTLIRTYLNLSRPHTSLSLFREMLHSQAAPNSYTFPSVLKAIASLSKSYGTSRIGYSLHAQCVERGLLDDPFVRTSFLSLYSQFGDIRSAHKVFDEIPQPCIVSNNAMLDAFGKGGNMDLAISMFFSMPKRDVYSWTTIINGYAQNGCFMEAIRFFIEMMRDEDVIRGLLRPSEATFVSVLSSCANSDDGLVLYQGKQIHGYMVRI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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