当前解析结果
SmilChr03G004205| 统一新 Gene ID | SmilChr03G004205 |
|---|---|
| 名称 | SmilChr03G004205 |
| 描述 | uncharacterized SmilChr03G004205 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60653795 - 60659670 / - |
| NCBI Gene ID | LOC131015081 |
|---|---|
| GeneID | 131015081 |
| locus_tag | - |
| NCBI Name | LOC131015081 |
| 原始查询 | SmilChr03G004205 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825373]; symbol=AT3G62000; hit=AT3G62000; species=arabidopsis; confidence=high |
| 产物 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825373]; symbol=AT3G62000; hit=AT3G62000; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G62000 (AT3G62000)S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825373] identity=67.6; qcov=0.933; evalue=8.25e-115; confidence=high |
| Rice | Os08g0154000 (OJ1349_D05.136)- identity=71.1; qcov=0.698; evalue=6.04e-93; confidence=high |
| GO | GO:0008171 (O-methyltransferase activity); GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity) |
| KEGG | - |
| Pfam | PF01596 (Methyltransf_3); PF13578 (Methyltransf_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015081 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057799295.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057799298.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799295.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799295.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799295.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60654439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,C48,C8 |
Chr3:60654493 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B104,B113,C17,C67 |
Chr3:60654991 |
G |
A |
EMS_canonical_SNV | stop_gained | 27 | A20,A22,A6,B112,B118,B121,B13,B139,B2,B25,B31,B42,B43,B52,B58,B88,B89,B94,C22,C29,C34,C39,C41,C49,C50,C60,C61 |
Chr3:60655570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr3:60656387 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B49,B89,C86 |
Chr3:60656427 |
TG |
T |
1bp_deletion | frameshift_variant | 28 | A20,B102,B108,B111,B112,B122,B132,B42,B48,B6,B63,B67,B72,B79,B87,B91,C12,C34,C35,C42,C61,C66,C7,C70,C81,C83,D4,D5 |
Chr3:60656430 |
AC |
A |
1bp_deletion | frameshift_variant | 27 | A20,B102,B108,B111,B112,B122,B132,B42,B48,B6,B63,B67,B72,B79,B87,B91,C12,C35,C42,C61,C66,C7,C70,C81,C83,D4,D5 |
Chr3:60656433 |
AGC |
A |
2bp_deletion | frameshift_variant | 27 | A20,B102,B108,B111,B112,B122,B132,B42,B48,B6,B63,B67,B72,B79,B87,B91,C12,C35,C42,C61,C66,C7,C70,C81,C83,D4,D5 |
Chr3:60656632 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,B89 |
Chr3:60656650 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr3:60656663 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr3:60656818 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B49,B85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799295.1PF01596
Methyltransf_3 83-281 aa
PF13578
Methyltransf_24 127-233 aa
XP_057799296.1PF01596
Methyltransf_3 83-281 aa
PF13578
Methyltransf_24 127-233 aa
XP_057799297.1PF01596
Methyltransf_3 83-281 aa
PF13578
Methyltransf_24 127-233 aa
XP_057799298.1PF01596
Methyltransf_3 83-276 aa
PF13578
Methyltransf_24 127-233 aa
XP_057799299.1PF01596
Methyltransf_3 83-243 aa
PF13578
Methyltransf_24 127-233 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799295.1 |
Pfam | PF01596 |
Methyltransf_3 | Domain | 83 | 281 | 4e-71 | 239.2 | O-methyltransferase |
XP_057799295.1 |
Pfam | PF13578 |
Methyltransf_24 | Domain | 127 | 233 | 4.4e-13 | 50.8 | Methyltransferase domain |
XP_057799296.1 |
Pfam | PF01596 |
Methyltransf_3 | Domain | 83 | 281 | 4e-71 | 239.2 | O-methyltransferase |
XP_057799296.1 |
Pfam | PF13578 |
Methyltransf_24 | Domain | 127 | 233 | 4.4e-13 | 50.8 | Methyltransferase domain |
XP_057799297.1 |
Pfam | PF01596 |
Methyltransf_3 | Domain | 83 | 281 | 4e-71 | 239.2 | O-methyltransferase |
XP_057799297.1 |
Pfam | PF13578 |
Methyltransf_24 | Domain | 127 | 233 | 4.4e-13 | 50.8 | Methyltransferase domain |
XP_057799298.1 |
Pfam | PF01596 |
Methyltransf_3 | Domain | 83 | 276 | 1e-65 | 221.6 | O-methyltransferase |
XP_057799298.1 |
Pfam | PF13578 |
Methyltransf_24 | Domain | 127 | 233 | 4.2e-13 | 50.8 | Methyltransferase domain |
XP_057799299.1 |
Pfam | PF01596 |
Methyltransf_3 | Domain | 83 | 243 | 4.2e-57 | 193.5 | O-methyltransferase |
XP_057799299.1 |
Pfam | PF13578 |
Methyltransf_24 | Domain | 127 | 233 | 3.9e-13 | 51.0 | Methyltransferase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。