Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004215`

染色体: Chr03 坐标: 60726807-60730533 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004215`
名称	SmilChr03G004215
描述	uncharacterized SmilChr03G004215
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	60726807 - 60730533 / `+`

ID 对照

NCBI Gene ID	`LOC131015092`
GeneID	`131015092`
locus_tag	`-`
NCBI Name	`LOC131015092`
原始查询	`SmilChr03G004215`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	spindle/kinetochore-associated protein [Source:NCBI gene (formerly Entrezgene);Acc:817036]; symbol=AT2G24970; hit=AT2G24970; species=arabidopsis; confidence=medium
产物	spindle/kinetochore-associated protein [Source:NCBI gene (formerly Entrezgene);Acc:817036]; symbol=AT2G24970; hit=AT2G24970; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G24970` (AT2G24970) spindle/kinetochore-associated protein [Source:NCBI gene (formerly Entrezgene);Acc:817036] identity=51.6; qcov=1; evalue=2.35e-49; confidence=medium
Rice	`Os01g0766400` - identity=40.8; qcov=0.981; evalue=4.36e-31; confidence=medium
GO	GO:0000278 (mitotic cell cycle); GO:0000940 (outer kinetochore); GO:0005876 (spindle microtubule); GO:0007059 (chromosome segregation); GO:0008017 (microtubule binding); GO:0051301 (cell division)
KEGG	-
Pfam	PF16740 (SKA2)
InterPro	-
eggNOG	-
NR	GeneID:131015092

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799321.1`
2	Chromosome	染色体	1.00000	`XP_057799322.1`
3	Centromere	着丝粒	0.60000	`XP_057799322.1`
4	Cytoplasm	细胞质	0.60000	`XP_057799322.1`
5	Cytoskeleton	细胞骨架	0.20000	`XP_057799322.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:60727202`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr3:60727266`	`C`	`CA`	1bp_insertion	frameshift_variant	100	A14,A15,A18,A19,A3,A7,B10,B100,B103,B11,B111,B113,B114,B115,B117,B118,B119,B124,B127,B132,B133,B134,B136,B137,B15,B16,B17,B18,B21,B23,B27,B30,B31,B34,B35,B37,B40,B46,B48,B50,B51,B52,B53,B59,B61,B66,B69,B70,B73,B75,B80,B81,B85,B9,B93,C1,C10,C12,C13,C14,C15,C16,C17,C19,C2,C20,C26,C3,C30,C31,C32,C33,C34,C4,C40,C48,C5,C50,C52,C54,C60,C63,C64,C66,C67,C68,C71,C75,C78,C79,C84,C86,C9,D11,D2,D3,D5,D7,D8,D9
`Chr3:60728007`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B127,B90,B92
`Chr3:60728096`	`G`	`GT`	1bp_insertion	frameshift_variant	1	C83
`Chr3:60728096`	`G`	`GT`	1bp_insertion	CDS_variant	1	C83
`Chr3:60728104`	`C`	`T`	EMS_canonical_SNV	stop_gained	7	A6,B101,B126,B33,B54,B7,C58
`Chr3:60728105`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr3:60728135`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B122,B24,B35
`Chr3:60728148`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C13
`Chr3:60728148`	`AG`	`A`	1bp_deletion	CDS_variant	1	C13
`Chr3:60728179`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A5,B104
`Chr3:60728232`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799322.1

155 aa

155

SKA2

PF16740 SKA2 5-117 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799322.1`	Pfam	`PF16740`	SKA2	Domain	5	117	4.5e-35	120.5	Spindle and kinetochore-associated protein 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943338.1
AATTCCCAAATTCAAATCCCTAAAGCCCCAAAGAGCGCGAGCGACACAGTCGAGAGAGAGAGAGAGACGGTGAAAAAATGGAGCACAACCAAGCTGTGGATGGACTTCTAAACCTGTTTTCCAAGGCCAATCGCGACCTCTCCGCAGTGCAGCACAAGCTCCACAAAGAATTCCAGCAAACCTACCCCGAAAACACAAATCCGATGAAGCTGGTGGAGAGGCTGAAAAAGATAGAGGAAGAAATGTCATCATTGAAGGAC...

XM_057943339.1
CCCAAATTCAAATCCCTAAAGCCCCAAAGAGCGCGAGCGACACAGTCGAGAGAGAGAGAGAGACGGTGAAAAAATGGAGCACAACCAAGCTGTGGATGGACTTCTAAACCTGTTTTCCAAGGCCAATCGCGACCTCTCCGCAGTGCAGCACAAGCTCCACAAAGAATTCCAGCAAACCTACCCCGAAAACACAAATCCGATGAAGCTGGTGGAGAGGCTGAAAAAGATAGAGGAAGAAATGTCATCATTGAAGGACGAGT...

CDS

2 records

下载 CDS FASTA

LOC131015092
ATGGAGCACAACCAAGCTGTGGATGGACTTCTAAACCTGTTTTCCAAGGCCAATCGCGACCTCTCCGCAGTGCAGCACAAGCTCCACAAAGAATTCCAGCAAACCTACCCCGAAAACACAAATCCGATGAAGCTGGTGGAGAGGCTGAAAAAGATAGAGGAAGAAATGTCATCATTGAAGGACGAGTGCCGCGAGCTTCTCGCATGCAAAACAGTTTTTGACATGCAGGATCTGATAGATAAAGCTAGAACACTCTTAGT...

LOC131015092
ATGTCATCTTGGTGTGTGGCTAGTGAAGATAAGGCACGTGGGAGTCAAAAGGGTTTCTCTCTGTGGGCACGAGTGCATAATCTATATCAAGAAGCTCGAACAAATAATCTGGAAGAACTCGGCGAAAGAAACATTGATATGATAAAAGGTCGTTGGAAACGACTTAATGAAAATGGAAACAAGTGGGTTGCTGCTTACAAGGAAGCATGTGCTCTGAAAAGGATTGGAATGAGCCTAGCGGATGTTGAGTTAGAAGCTCA...

Protein

2 records

下载 Protein FASTA

XP_057799321.1
MSSWCVASEDKARGSQKGFSLWARVHNLYQEARTNNLEELGERNIDMIKGRWKRLNENGNKWVAAYKEACALKRIGMSLADVELEAHAIYEASGSKFRDSVVFNEVMSKHPKWDLTSQDFSRLHPKNKETIPESPKNEETIQESGGSSKRSRTSEDGDYSMPSNLETPSIGCSTIPCPKSPKTPNASESLSNNEVAAEIRALRLIIDSEAEVMSKLGSARIDLELKKEKRKAMKMNQVLLNTLLAKDHLSAEDEGIKHRL...

XP_057799322.1
MEHNQAVDGLLNLFSKANRDLSAVQHKLHKEFQQTYPENTNPMKLVERLKKIEEEMSSLKDECRELLACKTVFDMQDLIDKARTLLVGNRTMLHRLQVSTGVPLTGDADGDDAYESFNQVIDEWATQVKSTKEDEEEPGSNDINQMLFSAIVQSN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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