当前解析结果
SmilChr03G004222| 统一新 Gene ID | SmilChr03G004222 |
|---|---|
| 名称 | SmilChr03G004222 |
| 描述 | uncharacterized SmilChr03G004222 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60783332 - 60786462 / + |
| NCBI Gene ID | LOC131015098 |
|---|---|
| GeneID | 131015098 |
| locus_tag | - |
| NCBI Name | LOC131015098 |
| 原始查询 | SmilChr03G004222 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ER membrane protein complex subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830945]; symbol=AT5G10780; hit=AT5G10780; species=arabidopsis; confidence=high |
| 产物 | ER membrane protein complex subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830945]; symbol=AT5G10780; hit=AT5G10780; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G10780 (AT5G10780)ER membrane protein complex subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830945] identity=80.2; qcov=0.973; evalue=7.26e-90; confidence=high |
| Rice | Os03g0360500- identity=71.1; qcov=0.989; evalue=1.23e-75; confidence=high |
| GO | GO:0034975 (protein folding in endoplasmic reticulum); GO:0072546 (EMC complex) |
| KEGG | - |
| Pfam | PF06417 (EMC4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015098 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057799332.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057799332.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799332.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799332.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799332.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60784016 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr3:60784466 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:60784509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,B23,C17 |
Chr3:60784539 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,C54 |
Chr3:60785312 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B123,B14 |
Chr3:60785339 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr3:60786191 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr3:60786200 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr3:60786216 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799332.1PF06417
EMC4 54-166 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799332.1 |
Pfam | PF06417 |
EMC4 | Family | 54 | 166 | 3.9e-39 | 134.0 | ER membrane protein complex subunit 4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。