Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004225`

染色体: Chr03 坐标: 60797184-60800326 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004225`
名称	SmilChr03G004225
描述	probably inactive copalyl diphosphate synthase 3-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	60797184 - 60800326 / `+`

ID 对照

NCBI Gene ID	`LOC131015099`
GeneID	`131015099`
locus_tag	`-`
NCBI Name	`LOC131015099`
原始查询	`SmilChr03G004225`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	probably inactive copalyl diphosphate synthase 3-like
产物	probably inactive copalyl diphosphate synthase 3-like
Arabidopsis	`AT4G02780` (GA1) Terpenoid cyclases/Protein prenyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828182] identity=33.1; qcov=0.835; evalue=1.94e-47; confidence=low
Rice	`Os02g0571100` (OsCPS2) - identity=32.1; qcov=0.823; evalue=1.91e-43; confidence=low
GO	GO:0000287 (magnesium ion binding); GO:0009507 (chloroplast); GO:0009686 (gibberellin biosynthetic process); GO:0010333 (terpene synthase activity)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131015099

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057799333.1`
2	Cytoplasm	细胞质	0.20000	`XP_057799333.1`
3	Cytosol	细胞质基质	0.20000	`XP_057799333.1`
4	Chloroplast stroma	叶绿体基质	0.20000	`XP_057799333.1`
5	Nucleus	细胞核	0.00000	`XP_057799333.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:60797227`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr3:60797322`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr3:60797325`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B83,B91,C15,D4
`Chr3:60797716`	`CAT`	`C`	2bp_deletion	frameshift_variant	6	A22,A5,B110,B118,B135,B66
`Chr3:60797739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B74,C54,C68
`Chr3:60798096`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:60798128`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A13,A18
`Chr3:60798160`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B90,B92,C44,C87,D10
`Chr3:60798507`	`CA`	`C`	1bp_deletion	frameshift_variant	10	A13,B124,B136,B137,B53,B8,C35,C50,C59,C7
`Chr3:60798574`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B20,C28,C78,D5
`Chr3:60798681`	`TG`	`T`	1bp_deletion	frameshift_variant	12	A22,A5,B110,B118,B135,B33,B5,B66,C60,C80,C86,D8
`Chr3:60798735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,C19,C4

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943350.1
ATTGTATTAATTTACATCCATCTTAAGTTGCAGGAACAATGTACATTCTTTCAACTCGACCCATCATTTTCCCTTTTGGAAATGGCTGCGAATCGATCTCCTCTTCTACACAAGGGCGTCGTCTCTCCTCGCAAAACTGCAGCAACAGGATATGGAAGAATGGGAGACATGAAGTTCCACCCCATATGAATAACTATCGTAGTTTCTGGAAAGATCTAACAAACGCTGCAAGAAGAGCAACTGCAGGTAAGTCGAAGTTT...

XM_057943351.1
ATTGTATTAATTTACATCCATCTTAAGTTGCAGGAACAATGTACATTCTTTCAACTCGACCCATCATTTTCCCTTTTGGAAATGGCTGCGAATCGATCTCCTCTTCTACACAAGGGCGTCGTCTCTCCTCGCAAAACTGCAGCAACAGGATATGGAAGAATGGGAGACATGAAGTTCCACCCCATATGAATAACTATCGTAGTTTCTGGAAAGATCTAACAAACGCTGCAAGAAGAGGTAAGTCGAAGTTTCCACAAGTA...

CDS

2 records

下载 CDS FASTA

LOC131015099
ATGTACATTCTTTCAACTCGACCCATCATTTTCCCTTTTGGAAATGGCTGCGAATCGATCTCCTCTTCTACACAAGGGCGTCGTCTCTCCTCGCAAAACTGCAGCAACAGGATATGGAAGAATGGGAGACATGAAGTTCCACCCCATATGAATAACTATCGTAGTTTCTGGAAAGATCTAACAAACGCTGCAAGAAGAGCAACTGCAGGTAAGTCGAAGTTTCCACAAGTATGTTCCGGAAATATTGATGGCATCGAGGT...

LOC131015099
ATGTACATTCTTTCAACTCGACCCATCATTTTCCCTTTTGGAAATGGCTGCGAATCGATCTCCTCTTCTACACAAGGGCGTCGTCTCTCCTCGCAAAACTGCAGCAACAGGATATGGAAGAATGGGAGACATGAAGTTCCACCCCATATGAATAACTATCGTAGTTTCTGGAAAGATCTAACAAACGCTGCAAGAAGAGGTAAGTCGAAGTTTCCACAAGTATGTTCCGGAAATATTGATGGCATCGAGGTGCAACCCTT...

Protein

2 records

下载 Protein FASTA

XP_057799333.1
MYILSTRPIIFPFGNGCESISSSTQGRRLSSQNCSNRIWKNGRHEVPPHMNNYRSFWKDLTNAARRATAGKSKFPQVCSGNIDGIEVQPLNEIKYGLETPWYARLPRLDARFFIEHYSVDEVLIDKSLYRLTDKKKDTYIELAKLDYNKCREQHQLEWNQMQQWYEDCKLEDFGISKRNILEAHFFAVASIYEVERSGERVAWVKSQILAEILQTYYYIKQLPQSKSDHEIEFTTAFGTKIHVGGEGFKNVQRIITILFE...

XP_057799334.1
MYILSTRPIIFPFGNGCESISSSTQGRRLSSQNCSNRIWKNGRHEVPPHMNNYRSFWKDLTNAARRGKSKFPQVCSGNIDGIEVQPLNEIKYGLETPWYARLPRLDARFFIEHYSVDEVLIDKSLYRLTDKKKDTYIELAKLDYNKCREQHQLEWNQMQQWYEDCKLEDFGISKRNILEAHFFAVASIYEVERSGERVAWVKSQILAEILQTYYYIKQLPQSKSDHEIEFTTAFGTKIHVGGEGFKNVQRIITILFEALT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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