Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004228`

染色体: Chr03 坐标: 60810949-60813374 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004228`
名称	SmilChr03G004228
描述	F-box/LRR-repeat protein At3g26922-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	60810949 - 60813374 / `-`

ID 对照

NCBI Gene ID	`LOC131015103`
GeneID	`131015103`
locus_tag	`-`
NCBI Name	`LOC131015103`
原始查询	`SmilChr03G004228`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/LRR-repeat protein At3g26922-like
产物	F-box/LRR-repeat protein At3g26922-like
Arabidopsis	`AT3G52680` (AT3G52680) F-box/RNI-like/FBD-like domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824434] identity=33.7; qcov=0.645; evalue=2.78e-26; confidence=low
Rice	`Os10g0128200` (OsFbox517) - identity=29.1; qcov=0.695; evalue=3.91e-15; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF12937 (F-box-like); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:131015103

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799337.1`
2	Chromosome	染色体	0.00000	`XP_057799337.1`
3	Centromere	着丝粒	0.00000	`XP_057799337.1`
4	Chromatin	染色质	0.00000	`XP_057799337.1`
5	Telomere	端粒	0.00000	`XP_057799337.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:60811345`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,B101,B126,B33
`Chr3:60811512`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B46,B47
`Chr3:60811543`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,B69
`Chr3:60812214`	`T`	`TTA`	2bp_insertion	frameshift_variant	15	A1,A9,B106,B117,B129,B38,B64,B66,B67,B78,B99,C33,C52,C58,D10
`Chr3:60812219`	`G`	`GAT`	2bp_insertion	frameshift_variant	15	A1,A9,B106,B117,B129,B38,B64,B66,B67,B78,C33,C52,C58,D1,D10
`Chr3:60812222`	`CCA`	`C`	2bp_deletion	frameshift_variant	3	B111,B9,C40
`Chr3:60812222`	`CCA`	`C`	2bp_deletion	CDS_variant	3	B111,B9,C40
`Chr3:60812223`	`CAA`	`C`	2bp_deletion	frameshift_variant	14	A1,A9,B106,B129,B38,B64,B66,B67,B78,C33,C52,C58,D1,D10
`Chr3:60812227`	`T`	`TTC`	2bp_insertion	frameshift_variant	14	A1,A9,B106,B129,B38,B64,B66,B67,B78,C33,C52,C58,D1,D10
`Chr3:60812323`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,B38
`Chr3:60812352`	`T`	`TC`	1bp_insertion	frameshift_variant	1	B101
`Chr3:60812352`	`T`	`TC`	1bp_insertion	CDS_variant	1	B101

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799337.1

452 aa

226

452

F-box

F-box-like

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 19-57 aa PF12937 F-box-like 20-52 aa PF23622 LRR_At1g61320_AtMIF1 82-242 aa PF24758 LRR_At5g56370 99-216 aa

XP_057799338.1

400 aa

200

400

F-box

F-box-like

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 19-57 aa PF12937 F-box-like 20-52 aa PF23622 LRR_At1g61320_AtMIF1 82-242 aa PF24758 LRR_At5g56370 99-216 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799337.1`	Pfam	`PF00646`	F-box	Domain	19	57	1.1e-07	32.2	F-box domain
`XP_057799337.1`	Pfam	`PF12937`	F-box-like	Domain	20	52	9.4e-06	26.0	F-box-like
`XP_057799337.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	82	242	1.6e-09	38.3	At1g61320/AtMIF1, LRR domain
`XP_057799337.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	99	216	3.6e-09	37.3	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057799338.1`	Pfam	`PF00646`	F-box	Domain	19	57	1.1e-07	32.2	F-box domain
`XP_057799338.1`	Pfam	`PF12937`	F-box-like	Domain	20	52	7.5e-06	26.3	F-box-like
`XP_057799338.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	82	242	7.9e-09	36.1	At1g61320/AtMIF1, LRR domain
`XP_057799338.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	99	216	2.9e-09	37.7	FBD-associated F-box protein At5g56370, LRR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943355.1
CTTCCTCATCGCGCCATAAAGCCTTCTTCATCCCTGCTCAAATGCTCGTAAATTCTCTCGTTCCTAAATATGCAATTCTCTCGCCCCTCTCCCTTTCTTCCGTAAATTCGGGCGAAGATACTCATTGACAGTAGGGTTTCACTTTTTTCTTGATCGAAAATTATTTTCGTAAAGCTGATCTTCCCACCACCACTATACATTTAATCCCAAGAATCAGCTTCAAAGAATCCGATCAGTTTTGAGCACTCCTCTTTGTATTA...

XM_057943354.1
CTTCCTCATCGCGCCATAAAGCCTTCTTCATCCCTGCTCAAATGCTCGTAAATTCTCTCGTTCCTAAATATGCAATTCTCTCGCCCCTCTCCCTTTCTTCCGTAAATTCGGGCGAAGATACTCATTGACAGTAGGGTTTCACTTTTTTCTTGATCGAAAATTATTTTCGTAAAGCTGATCTTCCCACCACCACTATACATTTAATCCCAAGAATCAGCTTCAAAGAATCCGATCAGTTTTGAGCACTCCTCTTTGTATTA...

CDS

2 records

下载 CDS FASTA

LOC131015103
ATGGATGAATGGGAAGATTACGGAACTGCAGAAGCAAACAGCGGTCGAGATCGACTCAGTGAGTTACCCGACTCTTTAATTCTTTCAATCCTTTCATTGTTGGATATGAGAGATGTTGTTCGGACAAGCATTTTCTCAAAACGTTGGAGAAATCTCTGGTCCACCATCCCCTGCCTTGAATTCATCGAACAAACTCCAAGTACTATTTCTCGTGTTCTTTCACAATGGAAATGCCCTAAGATTCTGAAATTCCGCTTATC...

Protein

2 records

下载 Protein FASTA

XP_057799337.1
MDEWEDYGTAEANSGRDRLSELPDSLILSILSLLDMRDVVRTSIFSKRWRNLWSTIPCLEFIEQTPSTISRVLSQWKCPKILKFRLSFRNFTEGLSIDVDSWLLFAIEKQVGELFLDFFNNVHVYSLPQSLYSCSSITKLTLEDCTLRIEENVQWNQLKILKLGYLNRLSGDAMNQILLGAPRLEELVLEYILYDDIGENENFNIRSTSLKMLTIRVDHDSHWPKTAVLRIWAPNLLTFSIDAIIYCTYLLDVPSLTHAI...

XP_057799338.1
MDEWEDYGTAEANSGRDRLSELPDSLILSILSLLDMRDVVRTSIFSKRWRNLWSTIPCLEFIEQTPSTISRVLSQWKCPKILKFRLSFRNFTEGLSIDVDSWLLFAIEKQVGELFLDFFNNVHVYSLPQSLYSCSSITKLTLEDCTLRIEENVQWNQLKILKLGYLNRLSGDAMNQILLGAPRLEELVLEYILYDDIGENENFNIRSTSLKMLTIRVDHDSHWPKTAVLRIWAPNLLTFSIDAIIYCTYLLDVPSLTHAI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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