Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004242`

染色体: Chr03 坐标: 60932936-60936598 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004242`
名称	SmilChr03G004242
描述	probable folate-biopterin transporter 2
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	60932936 - 60936598 / `+`

ID 对照

NCBI Gene ID	`LOC131015117`
GeneID	`131015117`
locus_tag	`-`
NCBI Name	`LOC131015117`
原始查询	`SmilChr03G004242`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable folate-biopterin transporter 2
产物	probable folate-biopterin transporter 2
Arabidopsis	`AT5G25050` (AT5G25050) Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832576] identity=62.3; qcov=1.01; evalue=2.57e-165; confidence=high
Rice	`Os04g0499100` (OSJNBa0029H02.8) - identity=61.1; qcov=0.962; evalue=8.02e-148; confidence=high
GO	GO:0016020 (membrane)
KEGG	-
Pfam	PF03092 (BT1)
InterPro	-
eggNOG	-
NR	GeneID:131015117

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057799349.1`
2	Vacuole membrane	液泡膜	0.80000	`XP_057799349.1`
3	Golgi apparatus	高尔基体	0.40000	`XP_057799351.1`
4	Nucleus	细胞核	0.00000	`XP_057799349.1`
5	Chromosome	染色体	0.00000	`XP_057799349.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:60933639`	`GA`	`G`	1bp_deletion	frameshift_variant	3	B140,C50,C77
`Chr3:60933639`	`GA`	`G`	1bp_deletion	CDS_variant	3	B140,C50,C77
`Chr3:60933666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr3:60933681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr3:60933694`	`C`	`CG`	1bp_insertion	frameshift_variant	118	A10,A11,A19,A2,A20,A21,A4,A6,A8,B1,B101,B107,B114,B117,B118,B119,B122,B126,B128,B130,B132,B134,B135,B136,B16,B17,B18,B2,B26,B27,B29,B3,B33,B34,B38,B39,B4,B41,B46,B47,B48,B49,B50,B53,B55,B57,B60,B61,B62,B63,B64,B65,B67,B68,B69,B7,B70,B71,B73,B74,B76,B77,B78,B79,B8,B81,B82,B87,B89,B91,B93,B94,B95,B97,C1,C10,C11,C12,C13,C14,C15,C17,C18,C19,C2,C23,C30,C31,C32,C34,C4,C41,C42,C45,C47,C48,C5,C51,C54,C55,C56,C57,C60,C62,C69,C7,C70,C74,C75,C77,C80,C81,C86,C9,D10,D4,D5,D8
`Chr3:60933695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr3:60933701`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr3:60933728`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B67,C53,C82
`Chr3:60933749`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B117,B136,B35,B52
`Chr3:60933760`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr3:60933768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B117,B35,B52,C54
`Chr3:60933785`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	C18,C2,C51,C59,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799349.1

499 aa

250

499

BT1

PF03092 BT1 62-464 aa

XP_057799350.1

499 aa

250

499

BT1

PF03092 BT1 62-464 aa

XP_057799351.1

366 aa

183

366

BT1

PF03092 BT1 10-331 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799349.1`	Pfam	`PF03092`	BT1	Family	62	464	7.5e-115	384.8	BT1 family
`XP_057799350.1`	Pfam	`PF03092`	BT1	Family	62	464	7.5e-115	384.8	BT1 family
`XP_057799351.1`	Pfam	`PF03092`	BT1	Family	10	331	7.1e-88	295.9	BT1 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057943366.1
AAAGTACGAAAAGAAATGACCCTTTTCGTTATTTTCTAAGCTATCTCAATACTTCAAATTTAAAAAATCTTTTGTTTTCTTGTAACTCCATGATTTTCTAAATTCCTCCTCCTCAATCTTGCCATGTCTATTTCTTGGTAAATGAACATTTTAAAGAATCTGATATTAAACGATCTGAGCTGAGCTAGTATAACATTATTTGAAATGTCAATCTCCAGAAAAACTATTATTCAAACCGTTTCATTCTGCTACCTACCTGC...

XM_057943367.1
ATTTAAAAAATCTTTTGTTTTCTTGTAACTCCATGATTTTCTAAATTCCTCCTCCTCAATCTTGCCATGTCTATTTCTTGGTAAATGAACATTTTAAAGAATCTGATATTAAACGATCTGAGCTGAGCTAGTATAACATTATTTGAAATGTCAATCTCCAGAAAAACTATTATTCAAACCGTTTCATTCTGCTACCTACCTGCTGCCTTGGAACTTTCTCCTATTTTGGCATTTATCTTTCACACAAGAGAAGAAAGAAA...

CDS

3 records

下载 CDS FASTA

LOC131015117
ATGGGGGAGGATGAAAGGCTCCCAACTTACGGCGATGAAGAGCGGGAGCTTCAGCCGCCGCCGCCGGTGGCGGAGAGCGAGATGCGGAGCATTTTCTGCAGCCCTGTTCATTGGTTCAAAATGCTTGCGAGGGAACTGCATTGGAGCTTTGTGTTTGGAGTGGTGATTGTGTATGGCGTGAGCCAAGGCTTAGGTGGAGCCCTTGCGAGAGTTGGGACGCAGTTTTACATGAAGGATGTGCAGAAGGTGCAGCCATCTGA...

Protein

3 records

下载 Protein FASTA

XP_057799349.1
MGEDERLPTYGDEERELQPPPPVAESEMRSIFCSPVHWFKMLARELHWSFVFGVVIVYGVSQGLGGALARVGTQFYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGILTDVVPISGYQRRPYFVFAGSLGIVSMLFLSLHPGLHIVLALLSLTAASASVAIADVTVDACVAQKSGLHHSLAADMQSLCSLSSSIGALVGFSLSGIFVHLIGPQGVYGLLTIPAGLVFVVGILLKEQRVSSFGYEQISQNLANAGKAMWNT...

XP_057799350.1
MGEDERLPTYGDEERELQPPPPVAESEMRSIFCSPVHWFKMLARELHWSFVFGVVIVYGVSQGLGGALARVGTQFYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGILTDVVPISGYQRRPYFVFAGSLGIVSMLFLSLHPGLHIVLALLSLTAASASVAIADVTVDACVAQKSGLHHSLAADMQSLCSLSSSIGALVGFSLSGIFVHLIGPQGVYGLLTIPAGLVFVVGILLKEQRVSSFGYEQISQNLANAGKAMWNT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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