当前解析结果
SmilChr03G004244| 统一新 Gene ID | SmilChr03G004244 |
|---|---|
| 名称 | SmilChr03G004244 |
| 描述 | protein RRC1 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60946300 - 60956212 / - |
| NCBI Gene ID | LOC131015120 |
|---|---|
| GeneID | 131015120 |
| locus_tag | - |
| NCBI Name | LOC131015120 |
| 原始查询 | SmilChr03G004244 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein RRC1 |
| 产物 | protein RRC1 |
| Arabidopsis | AT5G25060 (RRC1)RNA recognition motif (RRM)-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:832577] identity=69.8; qcov=0.999; evalue=0; confidence=high |
| Rice | Os02g0179900- identity=82.8; qcov=0.174; evalue=1.06e-85; confidence=weak |
| GO | GO:0003723 (RNA binding); GO:0005634 (nucleus); GO:0006396 (RNA processing) |
| KEGG | smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00076 (RRM_1); PF01805 (Surp); PF04818 (CID); PF08312 (cwf21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015120 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057799354.1 |
| 2 | Nuclear speckle | 核斑点 | 0.80000 | XP_057799354.1 |
| 3 | Nucleoplasm | 核质 | 0.80000 | XP_057799356.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799354.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799354.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60946918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr3:60947057 |
TC |
T |
1bp_deletion | frameshift_variant | 179 | A1,A10,A11,A16,A18,A19,A2,A20,A21,A22,A23,A24,A3,A4,A6,A7,A8,A9,B1,B10,B100,B102,B104,B105,B106,B107,B109,B110,B112,B117,B119,B12,B120,B121,B122,B123,B124,B125,B127,B128,B13,B130,B132,B134,B136,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B33,B34,B36,B37,B38,B39,B4,B40,B43,B45,B46,B47,B48,B5,B52,B54,B57,B58,B59,B60,B61,B63,B65,B66,B67,B7,B70,B71,B74,B76,B77,B78,B8,B81,B82,B85,B86,B87,B88,B89,B90,B91,B92,B93,B94,B95,B98,B99,C12,C14,C15,C16,C2,C20,C21,C24,C25,C26,C28,C29,C3,C30,C31,C32,C35,C36,C38,C4,C40,C41,C42,C44,C45,C46,C48,C49,C5,C50,C51,C53,C54,C55,C56,C57,C59,C6,C60,C61,C62,C63,C64,C65,C66,C70,C72,C73,C75,C76,C78,C79,C8,C80,C82,C84,C85,C86,C87,D1,D11,D2,D3,D4,D6,D7,D8 |
Chr3:60947762 |
AT |
A |
1bp_deletion | frameshift_variant | 21 | A10,A9,B117,B125,B15,B21,B28,B37,B46,B52,B66,B76,C16,C24,C55,C61,C72,C73,C75,C79,D1 |
Chr3:60947903 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr3:60948541 |
CA |
C |
1bp_deletion | frameshift_variant | 55 | A16,A19,A20,A21,A24,A3,A4,A7,A8,B108,B109,B112,B113,B124,B128,B13,B132,B139,B140,B15,B2,B20,B24,B33,B34,B38,B4,B45,B48,B53,B71,B74,B78,B82,B84,B87,B89,B97,C24,C29,C30,C36,C4,C45,C48,C49,C6,C64,C66,C79,C82,C84,D11,D3,D6 |
Chr3:60949175 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr3:60949223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B7,C58 |
Chr3:60949290 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,A5,A9,B98,D7 |
Chr3:60949463 |
CT |
C |
1bp_deletion | frameshift_variant | 14 | A10,A9,B125,B21,B37,B46,B52,B53,B66,C55,C72,C75,C79,D1 |
Chr3:60949733 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | A15,B121,B126,B139,B25,B30,B74,C80 |
Chr3:60950602 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B24,B50,C14,D5 |
Chr3:60951248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799354.1PF00076
RRM_1 187-259 aa
PF01805
Surp 326-393 aa
PF04818
CID 449-577 aa
PF08312
cwf21 815-860 aa
XP_057799355.1PF00076
RRM_1 187-259 aa
PF01805
Surp 326-393 aa
PF04818
CID 449-577 aa
PF08312
cwf21 815-860 aa
XP_057799356.1PF00076
RRM_1 184-256 aa
PF01805
Surp 323-390 aa
PF04818
CID 446-574 aa
PF08312
cwf21 812-857 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799354.1 |
Pfam | PF00076 |
RRM_1 | Domain | 187 | 259 | 9e-13 | 48.6 | RNA recognition motif |
XP_057799354.1 |
Pfam | PF01805 |
Surp | Domain | 326 | 393 | 3.9e-19 | 68.8 | Surp module |
XP_057799354.1 |
Pfam | PF04818 |
CID | Repeat | 449 | 577 | 1.3e-07 | 32.5 | CID domain |
XP_057799354.1 |
Pfam | PF08312 |
cwf21 | Domain | 815 | 860 | 4.5e-11 | 43.3 | cwf21 domain |
XP_057799355.1 |
Pfam | PF00076 |
RRM_1 | Domain | 187 | 259 | 9e-13 | 48.6 | RNA recognition motif |
XP_057799355.1 |
Pfam | PF01805 |
Surp | Domain | 326 | 393 | 3.9e-19 | 68.8 | Surp module |
XP_057799355.1 |
Pfam | PF04818 |
CID | Repeat | 449 | 577 | 1.3e-07 | 32.5 | CID domain |
XP_057799355.1 |
Pfam | PF08312 |
cwf21 | Domain | 815 | 860 | 4.5e-11 | 43.3 | cwf21 domain |
XP_057799356.1 |
Pfam | PF00076 |
RRM_1 | Domain | 184 | 256 | 9e-13 | 48.6 | RNA recognition motif |
XP_057799356.1 |
Pfam | PF01805 |
Surp | Domain | 323 | 390 | 4.9e-19 | 68.5 | Surp module |
XP_057799356.1 |
Pfam | PF04818 |
CID | Repeat | 446 | 574 | 1.3e-07 | 32.5 | CID domain |
XP_057799356.1 |
Pfam | PF08312 |
cwf21 | Domain | 812 | 857 | 4.5e-11 | 43.3 | cwf21 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。