Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004248`

染色体: Chr03 坐标: 60966271-60971100 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004248`
名称	SmilChr03G004248
描述	uncharacterized SmilChr03G004248
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	60966271 - 60971100 / `-`

ID 对照

NCBI Gene ID	`LOC131015123`
GeneID	`131015123`
locus_tag	`-`
NCBI Name	`LOC131015123`
原始查询	`SmilChr03G004248`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Sas10/Utp3/C1D family [Source:NCBI gene (formerly Entrezgene);Acc:832579]; symbol=AT5G25080; hit=AT5G25080; species=arabidopsis; confidence=high
产物	Sas10/Utp3/C1D family [Source:NCBI gene (formerly Entrezgene);Acc:832579]; symbol=AT5G25080; hit=AT5G25080; species=arabidopsis; confidence=high
Arabidopsis	`AT5G25080` (AT5G25080) Sas10/Utp3/C1D family [Source:NCBI gene (formerly Entrezgene);Acc:832579] identity=55.2; qcov=0.957; evalue=1.27e-77; confidence=high
Rice	`Os08g0270200` - identity=50; qcov=0.924; evalue=3.66e-57; confidence=high
GO	GO:0000178 (exosome (RNase complex)); GO:0000460 (maturation of 5.8S rRNA); GO:0003677 (DNA binding); GO:0003723 (RNA binding); GO:0005730 (nucleolus); GO:0010468 (regulation of gene expression)
KEGG	smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF04000 (Sas10_Utp3)
InterPro	-
eggNOG	-
NR	GeneID:131015123

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799359.1`
2	Chromosome	染色体	0.40000	`XP_057799359.1`
3	Nucleoplasm	核质	0.40000	`XP_057799359.1`
4	Centromere	着丝粒	0.00000	`XP_057799359.1`
5	Chromatin	染色质	0.00000	`XP_057799359.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:60969361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr3:60969481`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C67
`Chr3:60969483`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr3:60970868`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B60,B85,C23,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799359.1

210 aa

105

210

Sas10_Utp3

PF04000 Sas10_Utp3 18-96 aa

XP_057799360.1

210 aa

105

210

Sas10_Utp3

PF04000 Sas10_Utp3 18-96 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799359.1`	Pfam	`PF04000`	Sas10_Utp3	Family	18	96	1.4e-12	48.7	Sas10/Utp3/C1D family
`XP_057799360.1`	Pfam	`PF04000`	Sas10_Utp3	Family	18	96	1.4e-12	48.7	Sas10/Utp3/C1D family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943377.1
GAGGGGCTGAATGCGCAATTACGTAAACTTTTGGGCTAAAACTAATAGCCCACAACTTTCTGACATTGTTAGATTCTCCGCCAACCCCAAAATCTGCAGAATTTGAGCCCTTCTTCCGTTCTTCGCTGGCTCACACTCACGAAGCTTAATTCAGCTAAATCGGAGTAGGGAAAAATCATAGAACAATGGAAACCGGGGGCGGTAGTAAGGTGATACCGGAATCAGTAATGGAGGCGCTGAAGAGAACTAACAGCAACATC...

XM_057943376.1
CTTTTGGGCTAAAACTAATAGCCCACAACTTTCTGACATTGTTAGATTCTCCGCCAACCCCAAAATCTGCAGAATTTGAGCCCTTCTTCCGTTCTTCGCTGGCTCACACTCACGAAGCTTAATTCAGCTAAATCGGAGTAGGGAAAAATCATAGAACAATGGAAACCGGGGGCGGTAGTAAGGTGATACCGGAATCAGTAATGGAGGCGCTGAAGAGAACTAACAGCAACATCGATGAAGTGAAGGCCAATTTGGACGAG...

CDS

2 records

下载 CDS FASTA

LOC131015123
ATGGAAACCGGGGGCGGTAGTAAGGTGATACCGGAATCAGTAATGGAGGCGCTGAAGAGAACTAACAGCAACATCGATGAAGTGAAGGCCAATTTGGACGAGCTGTTATCTTACTGTGACACAGAAACCCTTTCAGCCATGGAGCCTCTCGAGAGGGCCCGAGTCCACTTATTGATTGCCAAAACAACAACTACTCTCTTTGCTTTGAGGCTAAGATGCAGAGGTGTTGATCCAGATGATCATCCTGTGAAAAAAGAGTT...

Protein

2 records

下载 Protein FASTA

XP_057799359.1
METGGGSKVIPESVMEALKRTNSNIDEVKANLDELLSYCDTETLSAMEPLERARVHLLIAKTTTTLFALRLRCRGVDPDDHPVKKEFERLSLYEEKLHRCIDLSKAPLRPSTTINTPAAARFIEHSLPDLSSEQKQSMREISRGEGHGFKYVNSNLQKKRKYQSSEKQSVRTAAQEFLEKAARELLGDNKNGVKGPLQPEDSDDDVVVLD

XP_057799360.1
METGGGSKVIPESVMEALKRTNSNIDEVKANLDELLSYCDTETLSAMEPLERARVHLLIAKTTTTLFALRLRCRGVDPDDHPVKKEFERLSLYEEKLHRCIDLSKAPLRPSTTINTPAAARFIEHSLPDLSSEQKQSMREISRGEGHGFKYVNSNLQKKRKYQSSEKQSVRTAAQEFLEKAARELLGDNKNGVKGPLQPEDSDDDVVVLD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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