当前解析结果
SmilChr03G004251| 统一新 Gene ID | SmilChr03G004251 |
|---|---|
| 名称 | SmilChr03G004251 |
| 描述 | transmembrane 9 superfamily member 8-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60980244 - 60984231 / - |
| NCBI Gene ID | LOC131015127 |
|---|---|
| GeneID | 131015127 |
| locus_tag | - |
| NCBI Name | LOC131015127 |
| 原始查询 | SmilChr03G004251 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transmembrane 9 superfamily member 8-like |
| 产物 | transmembrane 9 superfamily member 8-like |
| Arabidopsis | AT5G10840 (EMP1)Endomembrane protein 70 protein family [Source:NCBI gene (formerly Entrezgene);Acc:830951] identity=82.5; qcov=0.974; evalue=0; confidence=high |
| Rice | Os08g0554900- identity=79.2; qcov=0.953; evalue=0; confidence=high |
| GO | GO:0016020 (membrane); GO:0072657 (protein localization to membrane) |
| KEGG | - |
| Pfam | PF02990 (EMP70) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015127 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057799364.1 |
| 2 | Trans-golgi network | Trans-golgi network | 0.40000 | XP_057799364.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057799364.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057799364.1 |
| 5 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057799364.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60980592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr3:60980624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,C54 |
Chr3:60980645 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr3:60980655 |
AG |
A |
1bp_deletion | frameshift_variant | 70 | A1,A10,A11,A13,A16,A24,A5,A9,B1,B10,B101,B114,B119,B121,B126,B127,B137,B14,B15,B16,B18,B19,B29,B32,B35,B36,B38,B39,B42,B43,B52,B54,B68,B69,B7,B74,B75,B78,B8,B83,B85,B88,B9,B90,B91,B92,B94,B98,C10,C12,C15,C26,C35,C44,C48,C57,C58,C59,C7,C72,C73,C77,C85,C86,C87,D2,D3,D4,D6,D9 |
Chr3:60980679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B117,B48,B93,C56 |
Chr3:60980760 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr3:60981028 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr3:60981427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,C54 |
Chr3:60981440 |
GC |
G |
1bp_deletion | frameshift_variant | 151 | A11,A13,A14,A15,A18,A20,A22,A23,A25,A4,A7,B1,B100,B103,B107,B109,B112,B114,B115,B117,B118,B119,B120,B123,B124,B129,B13,B130,B131,B133,B135,B136,B137,B139,B14,B15,B16,B17,B18,B2,B20,B22,B23,B25,B26,B29,B3,B30,B31,B35,B37,B38,B39,B4,B45,B48,B49,B5,B50,B51,B52,B53,B55,B56,B57,B58,B59,B6,B60,B61,B63,B64,B65,B66,B7,B71,B72,B73,B74,B75,B76,B77,B78,B79,B80,B81,B84,B86,B87,B88,B89,B9,B95,B96,B97,B99,C13,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C27,C3,C30,C31,C34,C36,C37,C42,C43,C45,C5,C51,C52,C53,C55,C56,C58,C59,C6,C62,C63,C64,C65,C66,C7,C70,C73,C75,C76,C79,C80,C81,C83,C84,C86,C9,D1,D10,D11,D2,D4,D7,D8 |
Chr3:60982759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799364.1PF02990
EMP70 63-601 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799364.1 |
Pfam | PF02990 |
EMP70 | Family | 63 | 601 | 7.8e-221 | 734.9 | Endomembrane protein 70 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。