Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004254`

染色体: Chr03 坐标: 61013515-61024170 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004254`
名称	SmilChr03G004254
描述	cleavage stimulation factor subunit 77
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	61013515 - 61024170 / `+`

ID 对照

NCBI Gene ID	`LOC131015131`
GeneID	`131015131`
locus_tag	`-`
NCBI Name	`LOC131015131`
原始查询	`SmilChr03G004254`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cleavage stimulation factor subunit 77
产物	cleavage stimulation factor subunit 77
Arabidopsis	`AT1G17760` (CSTF77) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838354] identity=60.8; qcov=0.98; evalue=0; confidence=high
Rice	`Os12g0571900` - identity=61.4; qcov=0.997; evalue=0; confidence=high
GO	GO:0003729 (mRNA binding); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0031124 (mRNA 3'-end processing)
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage))
Pfam	PF05843 (Suf); PF13428 (TPR_14); PF23240 (HAT_PRP39_N); PF23241 (HAT_PRP39_C)
InterPro	-
eggNOG	-
NR	GeneID:131015131

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799369.1`
2	Nucleus membrane	核膜	0.20000	`XP_057799369.1`
3	Cytoplasm	细胞质	0.20000	`XP_057799370.1`
4	Chromosome	染色体	0.00000	`XP_057799370.1`
5	Centromere	着丝粒	0.00000	`XP_057799370.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:61015016`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B115,B131,B139,B69,C28
`Chr3:61015074`	`GT`	`G`	1bp_deletion	frameshift_variant	64	A10,A11,A13,A19,A25,A3,B10,B108,B11,B113,B119,B122,B124,B128,B131,B132,B24,B26,B3,B35,B37,B40,B51,B53,B54,B57,B6,B61,B7,B72,B73,B79,B84,B88,B89,B92,B98,B99,C21,C27,C3,C32,C38,C39,C46,C49,C5,C52,C54,C58,C60,C64,C67,C68,C70,C71,C72,C75,C84,C85,D1,D2,D7,D9
`Chr3:61015084`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,C39
`Chr3:61015362`	`A`	`AG`	1bp_insertion	frameshift_variant	187	A10,A14,A18,A19,A2,A20,A22,A24,A3,A4,A5,A6,A7,B1,B10,B100,B101,B102,B103,B104,B105,B106,B108,B109,B11,B112,B114,B115,B117,B118,B120,B121,B122,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B134,B135,B136,B137,B138,B139,B140,B16,B18,B2,B20,B21,B22,B26,B28,B29,B30,B32,B33,B35,B36,B37,B38,B4,B41,B42,B43,B44,B46,B47,B49,B5,B51,B52,B54,B55,B56,B58,B59,B6,B60,B61,B64,B65,B67,B68,B69,B7,B70,B71,B72,B73,B74,B76,B77,B78,B79,B8,B81,B82,B83,B84,B87,B90,B91,B92,B93,B94,B95,B96,B97,B98,C1,C10,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C23,C24,C25,C26,C27,C28,C29,C30,C31,C33,C34,C35,C36,C37,C38,C39,C4,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C6,C62,C66,C68,C69,C7,C72,C73,C76,C78,C8,C80,C81,C83,C85,C86,C87,C9,D1,D2,D3,D4,D5,D7,D8,D9
`Chr3:61016882`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B82,C72
`Chr3:61016902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B101,B126,B33,B87
`Chr3:61018706`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,B24,C8
`Chr3:61018730`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:61018897`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B114,B69
`Chr3:61019262`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B121,B32,B41,B64
`Chr3:61020115`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr3:61020616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B123,B4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799369.1

763 aa

382

763

Suf

HAT_PRP39_N

HAT_PRP39_C

TPR_14

PF05843 Suf 18-521 aa PF23240 HAT_PRP39_N 38-183 aa PF23241 HAT_PRP39_C 234-363 aa PF13428 TPR_14 282-325 aa

XP_057799370.1

640 aa

320

640

Suf

HAT_PRP39_C

TPR_14

PF05843 Suf 23-398 aa PF23241 HAT_PRP39_C 111-240 aa PF13428 TPR_14 159-202 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799369.1`	Pfam	`PF05843`	Suf	Repeat	18	521	1.1e-160	536.4	Suppressor of forked protein (Suf)
`XP_057799369.1`	Pfam	`PF23240`	HAT_PRP39_N	Repeat	38	183	8e-37	127.6	PRP39 N-terminal HAT repeat
`XP_057799369.1`	Pfam	`PF23241`	HAT_PRP39_C	Repeat	234	363	8.1e-31	107.7	PRP39 C-terminal HAT repeat
`XP_057799369.1`	Pfam	`PF13428`	TPR_14	Repeat	282	325	5.2e-12	45.9	Tetratricopeptide repeat
`XP_057799370.1`	Pfam	`PF05843`	Suf	Repeat	23	398	1.4e-119	400.8	Suppressor of forked protein (Suf)
`XP_057799370.1`	Pfam	`PF23241`	HAT_PRP39_C	Repeat	111	240	3e-25	89.6	PRP39 C-terminal HAT repeat
`XP_057799370.1`	Pfam	`PF13428`	TPR_14	Repeat	159	202	1e-10	41.9	Tetratricopeptide repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943386.1
GGGTCAAATCAGATCTATACTCTTTATGCCCGTTTTGATCATTCTATTTCATCGATCGGTTTCCAAAATTAATTTCCTTAATTTTGGCTTACCTTGTGTTATTAGATTTGGGTCGGTGCGATCCTGCCTCAGTTGCCAAAACGGGTTAGCGAGTTGGGTCAATCTTGTGATTTACCAAAACCCGGATCACCACCGGAACTTTCTTCCACCACCCACCATAACCACGACCGCCATCGCTTTTCTTTTGGGTCTCGCTGCAC...

XM_057943387.1
ATTGCTTGCAAGTTCCTCTTTGGCGCTGCTACATTCGCTTCATAAGGAAAGTTAATGATAAGAAGGGAATTGAGGGTCAAGAAGAGACTAAGAAAGCTTTTGAATTCATGCTTAACTATGTTGGCACAAACAACTTTAGAAGAATCGCAGCGGATGACTACCATACGTAAAATATATCAGAGGGCTATTGTTATGCCTACTCACCATGTTGAACAACTTTGGAGAGACTATGAGAATTTTGAGAATTCAGTGAGCCGTGC...

CDS

2 records

下载 CDS FASTA

LOC131015131
ATGGCCAGCGAGGCAGCTCAACCGAACTCGCTTTCTCTTTATGATGGGAATGCAGATAAGTTTAACGTCGAAGCAGCTGAAAAGCTTGCCAATGAGGCACTGCGGTTGCCAATATCAGATGCAGTGCCCCTATACGAGCATCTTCTGGCCACTTTCCCCACTTCGGCAAAATACTGGAAGCAATATGTTGAAGCTCTCATGGCTGGAAACAATGATGAAGCAACAAAACAAGTTTTTAGCCGTTGTCTTTTGAATTGCTT...

LOC131015131
ATGATAAGAAGGGAATTGAGGGTCAAGAAGAGACTAAGAAAGCTTTTGAATTCATGCTTAACTATGTTGGCACAAACAACTTTAGAAGAATCGCAGCGGATGACTACCATACGTAAAATATATCAGAGGGCTATTGTTATGCCTACTCACCATGTTGAACAACTTTGGAGAGACTATGAGAATTTTGAGAATTCAGTGAGCCGTGCACTGGCAAAAGGGTTGGTGACTGAATATCAGCCAAAATATAACAGTGCAAGGGC...

Protein

2 records

下载 Protein FASTA

XP_057799369.1
MASEAAQPNSLSLYDGNADKFNVEAAEKLANEALRLPISDAVPLYEHLLATFPTSAKYWKQYVEALMAGNNDEATKQVFSRCLLNCLQVPLWRCYIRFIRKVNDKKGIEGQEETKKAFEFMLNYVGADIASGPVWMEYIAYLKSLPAQTTLEESQRMTTIRKIYQRAIVMPTHHVEQLWRDYENFENSVSRALAKGLVTEYQPKYNSARAVYRERKKYVDEIDWNMLTVPPSGTPKEEMQWVAWKKLLSFEKGNPQRIDN...

XP_057799370.1
MIRRELRVKKRLRKLLNSCLTMLAQTTLEESQRMTTIRKIYQRAIVMPTHHVEQLWRDYENFENSVSRALAKGLVTEYQPKYNSARAVYRERKKYVDEIDWNMLTVPPSGTPKEEMQWVAWKKLLSFEKGNPQRIDNASANKRITFAYEQCLMYLYHYPDIWYDYAMWHAINGSQDSAIKVFQRALKALPDSEMLKYAYAELEETRGAAQAAKKVYESLLGDGVNATALSHIQFIRFIRRTEGVEAARKYFLDARKSPNC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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