Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004263`

染色体: Chr03 坐标: 61120192-61121854 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004263`
名称	SmilChr03G004263
描述	CBL-interacting serine/threonine-protein kinase 5-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	61120192 - 61121854 / `-`

ID 对照

NCBI Gene ID	`LOC131015141`
GeneID	`131015141`
locus_tag	`-`
NCBI Name	`LOC131015141`
原始查询	`SmilChr03G004263`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	CBL-interacting serine/threonine-protein kinase 5-like
产物	CBL-interacting serine/threonine-protein kinase 5-like
Arabidopsis	`AT5G10930` (CIPK5) CBL-interacting protein kinase 5 [Source:NCBI gene (formerly Entrezgene);Acc:830960] identity=65.1; qcov=1.02; evalue=0; confidence=high
Rice	`Os09g0418000` (OsCIPK16) - identity=59.2; qcov=0.979; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction)
KEGG	-
Pfam	PF00069 (Pkinase); PF03822 (NAF); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like)
InterPro	-
eggNOG	-
NR	GeneID:131015141

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057799380.1`
2	Nucleus	细胞核	0.60000	`XP_057799380.1`
3	Cytoplasm	细胞质	0.40000	`XP_057799380.1`
4	Cell membrane	细胞膜	0.20000	`XP_057799380.1`
5	Chromosome	染色体	0.00000	`XP_057799380.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:61120445`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B128,C24,C61
`Chr3:61120518`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,B49,C70
`Chr3:61120590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:61120615`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C11
`Chr3:61120615`	`GC`	`G`	1bp_deletion	CDS_variant	1	C11
`Chr3:61120677`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B127,C72,C9
`Chr3:61120714`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B108,B136,C23
`Chr3:61120723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr3:61120750`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:61120826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:61120838`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B65,B77
`Chr3:61120853`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B15,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799380.1

436 aa

218

436

Pkinase

PK_Tyr_Ser-Thr

Kinase-like

NAF

PF00069 Pkinase 12-263 aa PF07714 PK_Tyr_Ser-Thr 13-256 aa PF14531 Kinase-like 110-213 aa PF03822 NAF 295-353 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799380.1`	Pfam	`PF00069`	Pkinase	Domain	12	263	1.3e-73	248.4	Protein kinase domain
`XP_057799380.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	13	256	1.9e-36	126.5	Protein tyrosine and serine/threonine kinase
`XP_057799380.1`	Pfam	`PF14531`	Kinase-like	Family	110	213	2.7e-08	34.2	Kinase-like
`XP_057799380.1`	Pfam	`PF03822`	NAF	Domain	295	353	9.2e-20	71.3	NAF domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943397.1
TAGCATAACATCACTGCGGATTCTCTGATCATCCAAGGAAGAAATACTTAATCATATTTCTGCATTTTTTTTTTTTTTTTTTTTTGAGGAAATCATATTTCTGCATTAATAACAAGATTAAAAGGAGAATTTCTTGAATCAATATGGCAGAAAACAAGAAAATAGTGATGGGAAAATACGAATTGGGAAGGCTCCTAGGCAGAGGAACCTTCGCGAAGGTCTACCTCGGCCGGAATCTGGCGACGGAGGAGTGCGTGGCG...

CDS

1 records

下载 CDS FASTA

LOC131015141
ATGGCAGAAAACAAGAAAATAGTGATGGGAAAATACGAATTGGGAAGGCTCCTAGGCAGAGGAACCTTCGCGAAGGTCTACCTCGGCCGGAATCTGGCGACGGAGGAGTGCGTGGCGGTGAAGGTGATGAAGAAAGACGAGGTGATCAAGAGCGAGAAGATGATGGAGCAGTTCAAGCGCGAGATCGCCGTGATGCGCCTCGTGCGCCACCCCAACATCGTCGGTCTCAAGGAGGTGATGGCGACGCGGTCCAAGATCTT...

Protein

1 records

下载 Protein FASTA

XP_057799380.1
MAENKKIVMGKYELGRLLGRGTFAKVYLGRNLATEECVAVKVMKKDEVIKSEKMMEQFKREIAVMRLVRHPNIVGLKEVMATRSKIFVVMEYVRGGELFAKVERGRLREGAARRYFQQLVSAVDFCHSRGVFHRDIKPENLLLDENGDLKISDFGLSALHDGGLLHTQCGTPAYVAPEVLRMKGYDGATADVWSCGVVLYVLLAGFLPFQDESLNGMYRKIFRGEYEIPPWFSSESRRLVSKLLVVDPGKRISIPGIMRV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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